Two new methods improve graph embedding without needing a complete graph structure.
problem Graph autoencoders' performance depends on the adjacency matrix quality.
method BAGE and VBAGE: unsupervised graph embedding via adaptive graph learning.
result The methods expand GAEs' applicability to datasets without graph structure.
This study explores complex structures on Lie algebras from graph perspectives.
problem Existence and characterization of complex structures on 2-step nilpotent Lie algebras.
method Introducing adapted complex structures and analyzing integrability conditions.
result Characterization of graphs that admit abelian adapted complex structures and unique invariant subgraphs.
Eigen-GNN enhances GNNs by preserving graph structures.
problem Existing shallow GNNs fail to effectively preserve graph structures.
method Integrates eigenspace of graph structures into GNNs as a dimensionality reduction module.
result Eigen-GNN boosts GNNs' ability to preserve graph structures without increasing depth.
GraphSTONE uses topic models to capture graph structures, improving GCN performance.
problem GCNs focus too much on node features and not enough on graph structures.
method GraphSTONE employs topic models of graphs to capture structural topics, which guide the aggregation of node features.
result GraphSTONE outperforms GCNs in performance, efficiency, and interpretability.
Proposes HypCSE for enhanced hierarchical clustering.
problem Challenges in existing hierarchical clustering methods.
method Hyperbolic Continuous Structural Entropy (HypCSE) neural networks.
result Superior performance on seven datasets.
Graph Neural Networks (GNNs), which generalize deep neural networks to graph-structured data, have drawn considerable attention and achieved state-of-the-art performance in numerous graph related tasks. However, existing GNN models mainly focus on designing graph convolution operations. The graph pooling (or downsampli…
Graph Convolutional Neural Networks (Graph CNNs) are generalizations of classical CNNs to handle graph data such as molecular data, point could and social networks. Current filters in graph CNNs are built for fixed and shared graph structure. However, for most real data, the graph structures varies in both size and con…
A new method generates graphs with hierarchical structures.
problem Generating graphs with natural hierarchical structures.
method Recursively generates community structures at multiple resolutions, parallel generation of all sub-structures.
result Improves generative performance on multiple graph datasets.
Graph learning from data represents a canonical problem that has received substantial attention in the literature. However, insufficient work has been done in incorporating prior structural knowledge onto the learning of underlying graphical models from data. Learning a graph with a specific structure is essential for …
Graph Cascades rewire graphs to improve structure-aware learning.
problem Improving graph neural networks and transformers for structure-aware learning.
method Graph Cascades uses contagion-based diffusion processes to construct an auxiliary graph with reinforced edges.
result Graph Cascades improves node-classification benchmarks across various graph types.
Numerous pattern recognition applications can be formed as learning from graph-structured data, including social network, protein-interaction network, the world wide web data, knowledge graph, etc. While convolutional neural network (CNN) facilitates great advances in gridded image/video understanding tasks, very limit…
IDGL learns better graph structure and embeddings iteratively.
problem Improving graph neural network node embeddings and graph structure.
method Iterative Deep Graph Learning framework that dynamically stops when graph structure optimizes for downstream tasks.
result IDGL consistently outperforms state-of-the-art baselines on nine benchmarks.
In this paper, we propose an end-to-end graph learning framework, namely Deep Iterative and Adaptive Learning for Graph Neural Networks (DIAL-GNN), for jointly learning the graph structure and graph embeddings simultaneously. We first cast the graph structure learning problem as a similarity metric learning problem and…
CTGCN learns dynamic graph embeddings preserving both local and global graph structure.
problem Learning node representations for evolving graphs while preserving both local and global graph structure.
method CTGCN uses k-core based temporal graph convolutional network to learn dynamic graph embeddings.
result CTGCN outperforms existing methods in link prediction and structural role classification.
This work proposes a method to learn graph structure for multivariate time series forecasting.
problem Improving multivariate time series forecasting by leveraging pairwise information.
method Learning a probabilistic graph model through optimizing mean performance over graph distribution parameterized by a neural network.
result Our method outperforms existing approaches in simplicity, efficiency, and performance.
This paper improves GNN robustness by aligning feature and adjacency matrix learning.
problem Improving robustness of graph neural networks (GNN) in noisy graph data.
method Proposes a novel regularized GSL approach that aligns feature information and graph information, incorporating sparse dimensional reduction.
result Demonstrates superior performance in noisy graph structures compared to competitive baselines.
MxPool learns graph features from diverse graphs using a hierarchical structure.
problem Learning graph features from diverse graphs with varying properties and sizes.
method MxPool uses a multiplex structure with multiple graph convolution/pooling networks in a hierarchical learning structure.
result MxPool outperforms state-of-the-art methods on graph classification benchmarks.
Graph Information Bottleneck (GIB) optimizes graph representations for robustness against adversarial attacks.
problem Challenges in learning graph representations due to structure and feature information.
method GIB is an information-theoretic principle that balances expressiveness and robustness by maximizing mutual information between representation and target, while constraining mutual information with input data.
result GIB-based models are more robust to adversarial attacks, achieving up to 31% improvement.
Investigates how neural network graph structure impacts predictive performance.
problem Lack of understanding between neural network graph structure and predictive performance.
method Developed relational graph representation to analyze neural networks, identifying a 'sweet spot' for improved performance.
result Identified a 'sweet spot' in relational graph structure that significantly improves neural network predictive performance.
PGNs dynamically infer and use graph structures to improve model generalization.
problem Static graph structures inferred by machine learning practitioners are often suboptimal for tasks.
method PGNs augment graphs with dynamically inferred pointers for improved model generalization.
result PGNs outperform unrestricted GNNs and Deep Sets on dynamic graph connectivity tasks.
GraphToken encodes structured data for LLMs, improving graph reasoning tasks.
problem Efficiently encoding structured data for large language models.
method GraphToken learns an encoding function to extend prompts with explicit structured information.
result Significant improvements across node, edge, and graph-level tasks on the GraphQA benchmark.
Auto-encoders have emerged as a successful framework for unsupervised learning. However, conventional auto-encoders are incapable of utilizing explicit relations in structured data. To take advantage of relations in graph-structured data, several graph auto-encoders have recently been proposed, but they neglect to reco…
The paper investigates why GNNs struggle to generalize from small to large graphs.
problem Challenges in graph neural networks' ability to generalize across different graph sizes.
method Identified and studied the effect of local structure on size generalization; proposed a novel SSL task.
result GNNs can converge to non-generalizing solutions when there is a discrepancy in local structure.
Generating graph structures is a challenging problem due to the diverse representations and complex dependencies among nodes. In this paper, we introduce Graph Variational Recurrent Neural Network (GraphVRNN), a probabilistic autoregressive model for graph generation. Through modeling the latent variables of graph data…
Graph neural networks (GNNs) are an emerging model for learning graph embeddings and making predictions on graph structured data. However, robustness of graph neural networks is not yet well-understood. In this work, we focus on node structural identity predictions, where a representative GNN model is able to achieve n…
A new metric compares true and learned causal graphs considering data and graph structure.
problem Comparing true and learned causal graphs accurately.
method Continuous Structural Intervention Distance (CSID) using conditional mean embeddings and maximum mean discrepancy.
result Validated the CSID with synthetic data, showing its effectiveness in comparing causal graphs.
New method separates graph structure from node attributes to recover lost signal.
problem Standard representation learning on attributed graphs merges incompatible metric spaces, leading to geometrically flawed alignment.
method Custom variational autoencoder that separates manifold learning from structural alignment.
result Transforms geometric conflict into interpretable structural descriptor, uncovering connectivity patterns and anomalies.
Paper introduces HGSL for heterogeneous graphs, improving edge type and weight recovery.
problem Learning structure in heterogeneous graphs with multiple node and edge types.
method Proposes H2MN model for DGPs and derives alternating optimization method.
result Demonstrates superior performance on synthetic and real-world datasets.
Generative models of graph structure have applications in biology and social sciences. The state of the art is GraphRNN, which decomposes the graph generation process into a series of sequential steps. While effective for modest sizes, it loses its permutation invariance for larger graphs. Instead, we present a permuta…
Generates low-dimensional node vectors for graphs with privacy while preserving structural preferences.
problem Publishing graph node vectors can leak sensitive individual information.
method SE-PrivGEmb, a skip-gram based technique with a unified noise tolerance mechanism and negative sampling probabilities.
result Our method outperforms existing methods in structural equivalence and link prediction tasks.
Graph transformers outperform graph convolutions by preserving community information.
problem Understanding why graph transformers perform well in node-level prediction tasks.
method Analyzing the Gaussian process limits of graph transformers with infinite width and infinite heads.
result Graph transformers maintain discriminative node representations even in deep layers, preventing oversmoothing.
node2coords learns interpretable graph node representations robust to graph perturbations.
problem Need representations that capture graph structure and are robust to perturbations.
method Proposes a graph representation learning algorithm using Wasserstein barycenters.
result Learned representations are interpretable and stable to graph perturbations.
As a new approach to train generative models, \emph{generative adversarial networks} (GANs) have achieved considerable success in image generation. This framework has also recently been applied to data with graph structures. We propose labeled-graph generative adversarial networks (LGGAN) to train deep generative model…
Paper predicts future graph structures using time series methods.
problem Forecasting dynamic graph structures with unseen nodes and edges.
method Time series forecasting for node degree prediction combined with flux balance analysis.
result Demonstrated utility and applicability of the approach on synthetic and real-world datasets.
Proposes a method for coarse graph alignment using sparse partial least squares.
problem Aligning graphs with community structures when there's no natural one-to-one mapping.
method Sparse partial least squares method incorporating observed graph structures and imposing sparsity.
result Demonstrates effectiveness in simulations.
Bi-GNN models drug interactions using a bi-level graph approach.
problem Predicting drug-drug interactions using machine learning.
method Bi-level graph neural networks that consider both interaction graph and representation graphs of drugs.
result Bi-GNN model improves DDI prediction accuracy compared to existing methods.
Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful new approach for learning generative models over graphs, which can capture both …
e-GGPs learn graph vertex transitions over time.
problem Static graph Gaussian Processes cannot handle dynamic graph structures.
method Proposes e-GGPs with a transition function and neighbourhood kernel.
result e-GGPs outperform static GGPs on time-series regression.
New metrics improve uncertainty estimation on graph data.
problem Current GNNs focus only on nodewise scores, limiting uncertainty estimation.
method Proposed edgewise metrics for uncertainty estimation on graphs.
result GNN models with structured prediction perform better in uncertainty estimation.
Study breaks down graphs into structural and featural components for task-agnostic data valuation.
problem Lack of methods to assess the value of graphs in data marketplaces.
method Introduces blind message passing framework to evaluate graphs without specific task metrics.
result Demonstrates effectiveness in capturing structural disparities, relevance, and diversity of seller data for buyers.
New findings on algebraic structure of hyperbolic graph braid groups.
problem Classifying and understanding the algebraic structure of hyperbolic graph braid groups.
method Analyzing specific graph types (sun and pulsar graphs) and proving theorems about their braid groups.
result 3-strand braid groups of sun graphs are free, while most pulsar graphs contain surface subgroups.
A new framework SIMBA improves graph classification performance on size-imbalanced datasets.
problem Size imbalance in graph classification leads to poor model performance.
method Energy-guided structural smoothing between head and tail graphs, re-weighting based on energy propagation.
result SIMBA outperforms existing methods in size-imbalanced graph classification tasks.
PASCO speeds up graph clustering for large graphs.
problem Efficiently clustering large graphs with many communities.
method Overlay method combining coarsening and parallel clustering.
result PASCO accelerates clustering with improved efficiency and quality.
Neural network learns causal graph structure from data.
problem Inferring causal graph structure from observational and interventional data.
method Supervised training of a neural network on synthetic graphs.
result Learned model generalizes to new graphs, robust to distribution shifts, and outperforms existing methods.
Global graph structure improves GNN performance.
problem Limited graph structure in GNNs leads to indistinguishable node embeddings.
method Empirically tested the impact of global graph information on GNN performance.
result Global information can significantly improve GNN performance by more than 5%.
Learning a graph with a specific structure is essential for interpretability and identification of the relationships among data. It is well known that structured graph learning from observed samples is an NP-hard combinatorial problem. In this paper, we first show that for a set of important graph families it is possib…
Graph data widely exist in many high-impact applications. Inspired by the success of deep learning in grid-structured data, graph neural network models have been proposed to learn powerful node-level or graph-level representation. However, most of the existing graph neural networks suffer from the following limitations…
The paper defines conditions for learning causal graphs from data with unobserved variables.
problem Learning causal graphs from data with unobserved variables.
method Formalizes constraint-based structure learning algorithms under conditions and assumptions.
result Natural family of algorithms output Markov equivalent graphs to the causal graph under faithfulness assumption.