DynDepNet learns dynamic brain graphs from fMRI data for better prediction performance.
problem Static brain graphs from fMRI data lead to poor GNN performance.
method Dynamic Graph Structure Learning for time-varying brain connectivity.
result DynDepNet achieves state-of-the-art sex classification accuracy on real-world fMRI data.
Framework learns structural and functional brain network embeddings while preserving their properties.
problem Joint learning of structural and functional brain networks while preserving their intrinsic properties.
method Siamese community-preserving graph convolutional network (SCP-GCN) that learns from both structural and functional connectivity.
result Superior performance in neurological disorder analysis compared to existing methods.
Generative model predicts multiple brain graphs from one, preserving topology.
problem Predicting multiple brain graphs from a single one, preserving topology.
method MultiGraphGAN architecture, graph adversarial auto-encoder, cluster-specific decoders, topological loss.
result Significantly outperformed variants in multi-view brain graph generation.
Novel graph framework detects early Alzheimer's using brain structure similarity.
problem Early detection of Alzheimer's disease is challenging due to irreversible neurodegenerative process.
method Combines inter-subject similarity and intra-subject variability within a graph of brain structures grading.
result Competitive performance compared to state-of-the-art methods.
A graph-based method detects abnormal brain connections in functional MRI data.
problem Detecting abnormal brain connections in functional MRI data.
method High-order Graph Auto-Encoder (GAE) with hypersphere distribution for functional data analysis.
result Identifies correlations between affected brain regions and their simultaneous occurrence over time.
A new kernel measures brain network similarities, improving disease classification.
problem Lack of edge weight information in existing graph kernels for brain connectivity networks.
method Ordinal pattern kernel for weighted brain connectivity networks.
result The ordinal pattern kernel achieves better classification performance than state-of-the-art graph kernels.
M2E embeds multi-view multi-graph brain networks for better clustering.
problem Clustering brain networks from multiple views to understand disease mechanisms.
method Stack multi-graphs into tensors, use tensor techniques to leverage multi-view and multi-graph interactions.
result M2E outperforms existing methods on clustering brain networks.
Paper introduces a new method to identify brain hubs using both structural and functional connectivity.
problem Hub node identification in brain networks using only functional connectivity.
method Graph signal processing framework that models functional activity as graph signals on structural connectivity.
result The proposed GraFHub framework identifies hub nodes more accurately than conventional methods.
Graph Signal Processing (GSP) is a promising framework to analyze multi-dimensional neuroimaging datasets, while taking into account both the spatial and functional dependencies between brain signals. In the present work, we apply dimensionality reduction techniques based on graph representations of the brain to decode…
Develops a new method to analyze brain networks for cognitive traits.
problem Challenges in summarizing and relating brain connectomes to human traits.
method Graph Auto-Encoding (GATE) model using deep learning.
result GATE improves prediction accuracy and efficiency over existing methods.
In this paper, we consider the problem of estimating multiple graphical models simultaneously using the fused lasso penalty, which encourages adjacent graphs to share similar structures. A motivating example is the analysis of brain networks of Alzheimer's disease using neuroimaging data. Specifically, we may wish to e…
Graph embedding improves fMRI classification and reveals brain region differences in ASD.
problem Difficult to embed informative brain fMRI representations due to high dimensionality and low SNR.
method Modelled fMRI as a graph, used GNN to learn from graph data, incorporated mutual information loss (Infomax).
result Infomax graph embedding improves classification performance and reveals separable nodal representations of ASD and HC groups.
DBGDGM models dynamic brain graphs for better understanding brain function.
problem Previous brain graph models ignore temporal dynamics, limiting their usefulness.
method DBGDGM clusters brain regions into evolving communities and learns dynamic node embeddings.
result DBGDGM outperforms baselines in graph generation, dynamic link prediction, and graph classification.
Combining brain structure and function for ASD diagnosis.
problem Identifying neuropathological bases of Autism Spectrum Disorder.
method Modeling brain structure as a graph, using rs-fMRI signals, and applying Graph Signal Processing.
result Decision tree outperforms state-of-the-art methods in diagnosing ASD.
GNNs improve brain activity forecasting in fMRI studies.
problem Understanding neural dynamics in the brain.
method Comparison of GNN architectures for modeling fMRI data.
result GNNs outperform VAR models in robustly scaling to large network studies.
Spontaneous brain activity, as observed in functional neuroimaging, has been shown to display reproducible structure that expresses brain architecture and carries markers of brain pathologies. An important view of modern neuroscience is that such large-scale structure of coherent activity reflects modularity properties…
Graph learning method improves brain state classification.
problem Classifying brain states from iEEG signals.
method Representation learning on graphs for time-varying brain networks.
result 9.13% improvement in AUC for seizure vs. non-seizure classification.
New method for analyzing brain dynamics using HMMs and graph models.
problem Limited ability of current brain models to explain spontaneous dynamic state changes.
method Hidden Markov Graph Models (HMGMs) and spatiotemporal random walks.
result Identification of important brain community structures.
Proposes a new similarity learning framework for brain networks.
problem Learning similarity metrics for neuroimages, especially fMRI and DTI.
method End-to-end similarity learning framework using Higher-order Siamese GCN.
result Achieves significant AUC gains over existing methods.
Spatially-sparse predictors are good models for brain decoding: they give accurate predictions and their weight maps are interpretable as they focus on a small number of regions. However, the state of the art, based on total variation or graph-net, is computationally costly. Here we introduce sparsity in the local neig…
We propose a novel framework for graph mean computation.
problem Defining a mean for graph data is difficult.
method Embeddings in the space of smooth graph signal distributions, using the Wasserstein metric.
result Existence and uniqueness of the graph mean established, and an iterative algorithm provided.
PR-GNN identifies salient brain regions for ASD biomarkers.
problem Identifying brain regions associated with neurological disorders.
method Pooling Regularized Graph Neural Network (PR-GNN) with novel salient region selection.
result PR-GNN outperforms baseline methods in ASD classification accuracy.
New method predicts AD progression using MEG brain networks.
problem Early diagnosis and prediction of Alzheimer's disease progression.
method MG2G, a deep learning method that maps brain networks into a latent space.
result MG2G detects subtle brain connectivity patterns and predicts AD progression.
Paper analyzes shapes of brain arterial networks using statistical methods.
problem Quantifying and comparing shapes of brain arterial networks.
method Mathematical representation of BAN shapes as elastic shape graphs, development of Riemannian metrics and geometrical tools.
result Age has a clear, quantifiable effect on BAN shapes, with increased variance in shapes as age increases.
Enhances disease progression modeling using LLMs for complex brain connectivity.
problem Inaccurate predictions of disease spread due to oversimplified brain connectivity models.
method Uses LLMs to synthesize multi-modal relationships and learn disease trajectories from longitudinal data.
result Superior prediction accuracy and interpretability compared to traditional methods.
End-to-end neural network extracts graph structure from EEG signals for improved emotional video classification.
problem Challenges in achieving accurate EEG classification for emotional video analysis.
method Proposes an end-to-end neural network model that learns an appropriate multi-layer graph structure from raw EEG signals.
result Improves performance in emotional video classification compared to manually defined connectivity structures.
Probabilistic ESI model improves brain activity pattern analysis.
problem Noise sensitivity and lack of time-varying pattern flexibility in traditional ESI methods.
method Hierarchical graph prior with spanning tree constraint and alternating convex search algorithm.
result Significant improvements in source localization performance, especially at high noise levels.
While statistical analysis of a single network has received a lot of attention in recent years, with a focus on social networks, analysis of a sample of networks presents its own challenges which require a different set of analytic tools. Here we study the problem of classification of networks with labeled nodes, motiv…
The paper predicts responses on out-of-sample nodes using latent positions on unknown curves.
problem Predicting responses on out-of-sample nodes with latent positions on unknown curves.
method Manifold learning and graph embedding technique using latent positions.
result Convergence guarantees for predicting responses on out-of-sample nodes.
In statistical connectomics, the quantitative study of brain networks, estimating the mean of a population of graphs based on a sample is a core problem. Often, this problem is especially difficult because the sample or cohort size is relatively small, sometimes even a single subject. While using the element-wise sampl…
Graph Neural Network identifies ASD biomarkers from fMRI data.
problem Finding biomarkers for Autism Spectrum Disorder (ASD).
method Graph Neural Network (GNN) for analyzing task-fMRI brain networks, 2-stage pipeline to interpret feature importance.
result GNN achieves high accuracy in identifying ASD biomarkers and reveals their association with social behaviors.
BiLiNGAM model reveals brain emotion circuit development in adolescents.
problem Understanding brain emotion circuit development during adolescence.
method Bayesian incorporated linear non-Gaussian acyclic model (BiLiNGAM) for multiple DAGs estimation.
result BiLiNGAM reveals unique developmental hub structures and group-specific patterns in emotion-related intra- and inter-modular connectivity.
Torus graphs analyze multivariate phase coupling among brain signals.
problem Identifying coordinated phase changes across multiple brain regions.
method Torus graphs based on full exponential family with pairwise interactions.
result Torus graphs accurately identify conditional associations in multivariate phase data.
Using predictive models to identify patterns that can act as biomarkers for different neuropathoglogical conditions is becoming highly prevalent. In this paper, we consider the problem of Autism Spectrum Disorder (ASD) classification where previous work has shown that it can be beneficial to incorporate a wide variety …
CI-GNN uses GNNs to diagnose psychiatric disorders by identifying causally relevant brain regions.
problem Leveraging GNNs for psychiatric diagnosis requires interpretable models to understand decision-making.
method CI-GNN integrates Granger causality into GNNs to identify causally relevant subgraphs.
result CI-GNN provides more reliable and concise explanations of psychiatric diagnoses.
New method identifies causal brain connections from fMRI data.
problem Identifying causal brain interactions from statistical associations.
method ψ-learning incorporated linear non-Gaussian acyclic model (ψ-LiNGAM). result Identified three types of hub structures and 16 causal flows.
A novel approach selects EEGs for better brain disease diagnosis.
problem Invalid/noisy EEGs degrade diagnosis performance.
method mwcEEGs: maximum weight clique-based approach.
result Improves classification performance by selecting intra-clique and inter-clique EEGs.
SM-netFusion estimates brain network atlas by considering multiple topological measures.
problem Limited BNA estimation methods that overlook topological measures and lack discriminative power.
method Supervised multi-topology network cross-diffusion framework using degree, closeness, and eigenvector centrality measures.
result SM-netFusion produces more centered and representative templates, and improves classification accuracy.
ST-GCN improves rs-fMRI prediction accuracy by modeling spatio-temporal graph connectivity.
problem Existing rs-fMRI methods neglect functional connectivity or temporal dynamics.
method Spatio-temporal graph convolutional network (ST-GCN) trained on BOLD time series.
result ST-GCN predicts gender and age more accurately than common methods.
Modeling brain connectivity networks with graph-aware inference.
problem Pooling over functional regions loses information and independence assumptions are unreliable.
method Linear mixed effects model accounting for functional regions and edge dependence.
result Interpretable results comparing schizophrenics and healthy controls.
VNNs transfer well across datasets for brain age prediction using cortical thickness features.
problem Predicting brain age using anatomical features.
method Transferability of coVariance neural networks (VNNs) in brain age prediction.
result VNNs can assign anatomical interpretability to elevated brain age gap in AD.
Researchers compare brain connectomes using geodesic distance on manifold for twin pairs.
problem Assessing functional similarity in brain networks between monozygotic and dizygotic twins.
method Using fMRI data, the researchers compared functional networks between mono- and dizygotic twin pairs by measuring similarity with geodesic distance on graph Laplacians.
result Functional networks are more similar in monozygotic twins compared to dizygotic twins, and similarity is higher for task-relevant networks.
Novel method models dynamic brain graphs from time series data.
problem Generating hypotheses for dynamic brain states.
method Conditionally weighted superposition of static graphs.
result Improves f1-scores by 22-28% on average over baselines.
Understanding the functional architecture of the brain in terms of networks is becoming increasingly common. In most fMRI applications functional networks are assumed to be stationary, resulting in a single network estimated for the entire time course. However recent results suggest that the connectivity between brain …
Develops GIN for fMRI sex classification, explaining results.
problem Difficulty in explaining GNN classification results in neuroscientific terms.
method Develops Graph Isomorphism Network (GIN) for fMRI data, leveraging CNN saliency maps.
result GIN enables visualization of brain regions important for sex classification.
We propose a new family of combinatorial inference problems for graphical models. Unlike classical statistical inference where the main interest is point estimation or parameter testing, combinatorial inference aims at testing the global structure of the underlying graph. Examples include testing the graph connectivity…
In clinical and neuroscientific studies, systematic differences between two populations of brain networks are investigated in order to characterize mental diseases or processes. Those networks are usually represented as graphs built from neuroimaging data and studied by means of graph analysis methods. The typical mach…
The functional and structural representation of the brain as a complex network is marked by the fact that the comparison of noisy and intrinsically correlated high-dimensional structures between experimental conditions or groups shuns typical mass univariate methods. Furthermore most network estimation methods cannot d…