This paper explains GNNs using graph signal denoising.
problem Understanding how GNNs work for node representation learning.
method Spectral graph convolutional networks and graph attention networks are analyzed from the perspective of graph signal denoising.
result GNNs implicitly solve graph signal denoising problems.
We propose a new framework for manifold denoising based on processing in the graph Fourier frequency domain, derived from the spectral decomposition of the discrete graph Laplacian. Our approach uses the Spectral Graph Wavelet transform in order to per- form non-iterative denoising directly in the graph frequency domai…
Paper proposes JDR to denoise graph features and rewire graphs for better node classification.
problem Jointly denoise noisy graph features and rewire graphs for improved node classification.
method Align leading spectral spaces of graph and feature matrices to solve non-convex optimization problem.
result JDR consistently outperforms existing methods on various node classification tasks.
Unified view of GNNs as graph signal denoising.
problem Understanding and improving GNNs for graph data.
method Established GNNs as graph denoising problems with smoothness assumptions.
result Unified framework UGNN for adaptive smoothness graphs.
The original contributions of this paper are twofold: a new understanding of the influence of noise on the eigenvectors of the graph Laplacian of a set of image patches, and an algorithm to estimate a denoised set of patches from a noisy image. The algorithm relies on the following two observations: (1) the low-index e…
New method denoises graph signals using wavelets, scalable for large graphs.
problem Denoising graph signals with overcomplete tight frames and correlated noise.
method Data-driven wavelet tight frame, Stein's unbiased risk estimate, Chebyshev-Jackson polynomial approximations, Monte-Carlo strategy.
result Method scales to large graphs and finds applications in differential privacy.
This work studies the denoising of piecewise smooth graph signals that exhibit inhomogeneous levels of smoothness over a graph, where the value at each node can be vector-valued. We extend the graph trend filtering framework to denoising vector-valued graph signals with a family of non-convex regularizers, which exhibi…
New analysis improves denoising of modulo signals on graphs.
problem Robustly unwrapping noisy modulo samples of smooth functions.
method Analyzing sphere-relaxation and unconstrained relaxation of a QCQP on a graph.
result Proves denoising of modulo observations w.r.t the ℓ2 norm in Gaussian noise. This study uses deep learning to improve the accuracy of raw data denoising in ProtoDUNE experiments.
problem Improving the accuracy of raw data denoising in ProtoDUNE experiments.
method Investigates two graph neural network architectures to enhance the receptive field of convolutional neural networks for raw data denoising.
result Graph neural network architectures outperform traditional algorithms in denoising raw ProtoDUNE data.
We study an extention of total variation denoising over images to over Cartesian power graphs and its applications to estimating non-parametric network models. The power graph fused lasso (PGFL) segments a matrix by exploiting a known graphical structure, G, over the rows and columns. Our main results shows that for …
Proposes DeGLIF to denoise graph data for label noise robustness.
problem Label noise in graph data makes node classification challenging.
method Uses leave-one-out influence function to denoise graph data.
result DeGLIF improves accuracy in node classification on noisy datasets.
STARK improves denoising of low-depth spatial transcriptomics images.
problem Denoising spatial transcriptomics images at ultra-low sequencing depths.
method Adaptive regularization with kernel ridge regression and graph Laplacian.
result STARK optimizes denoising performance over competing methods.
The paper analyzes oversmoothing in GNNs and quantifies the effects of mixing and denoising.
problem Oversmoothing in Graph Neural Networks (GNNs).
method Non-asymptotic analysis of graph convolutions and effects of mixing and denoising.
result The number of layers required for oversmoothing to occur is O(logN/log(logN)) for dense graphs. Proposes GIB for recognizing informative subgraphs in graphs.
problem Recognizing a subgraph that is maximally informative yet compressive.
method Graph Information Bottleneck (GIB) framework, mutual information estimator, bi-level optimization, connectivity loss.
result IB-subgraph improves graph classification, interpretation, and denoising.
Deep GNNs and self-supervision boost graph learning at scale.
problem Efficiently deploying GNNs at large scale remains challenging.
method Two large-scale GNNs: a deep transductive node classifier and a very deep inductive graph regressor.
result Award-level performance on MAG240M and PCQM4M benchmarks.
Discrete noise improves graph generation quality and speed.
problem Generating high-quality discrete graph samples.
method Using discrete noise in diffusion models for graph generation.
result Discrete noise leads to 1.5x better MMDs and 30x faster sampling.
Neighbor Mixture Model captures node correlations in graphs.
problem Modeling correlations between node labels in graphs.
method Neighbor Mixture Model (NMM) designed for efficient computation and scalability.
result NMM outperforms state-of-the-art models in various graph tasks.
New method for faster graph parameter inference from large random Kronecker graphs.
problem Efficiently infer graph parameters from large random Kronecker graphs.
method Decompose adjacency matrix into signal and noise components, then use denoising and solving approach.
result Proposed method achieves comparable or better performance than existing methods at lower computational cost.
Modern methods for learning over graph input data have shown the fruitfulness of accounting for relationships among elements in a collection. However, most methods that learn over set input data use only rudimentary approaches to exploit intra-collection relationships. In this work we introduce Deep Message Passing on …
DISTANA predicts and denoises spatial wave dynamics.
problem Identifying causality in spatially distributed, non-linear dynamical processes.
method Generative, recurrent graph convolution neural network architecture (DISTANA).
result DISTANA outperforms alternative approaches in denoising and predicting complex spatial wave propagation.
DDCD uses diffusion models to learn causal structures from noisy data.
problem Scalability and stability issues in high-dimensional causal structure learning.
method Adaptive k-hop acyclicity constraint and denoising score matching objective of diffusion models.
result DDCD achieves competitive performance on synthetic and real-world data.
A new model designs molecular latent vectors for drug discovery.
problem Designing effective molecular descriptors from molecular structures.
method Proposes a denoising diffusion probabilistic model (DDPM) for variational autoencoding molecular graphs.
result Demonstrates superior prediction performance and robustness compared to existing approaches.
Laplacian Eigenvectors of the graph constructed from a data set are used in many spectral manifold learning algorithms such as diffusion maps and spectral clustering. Given a graph constructed from a random sample of a d-dimensional compact submanifold M in RD, we establish the spectral convergence rate…
Problems in machine learning (ML) can involve noisy input data, and ML classification methods have reached limiting accuracies when based on standard ML data sets consisting of feature vectors and their classes. Greater accuracy will require incorporation of prior structural information on data into learning. We study …
Privacy-preserving GNNs for graph data with sensitive node data.
problem Privacy concerns in learning node representations for graphs with sensitive data.
method Developed a privacy-preserving GNN learning algorithm based on Local Differential Privacy (LDP). Proposed an LDP encoder, an unbiased rectifier, and a denoising mechanism (KProp).
result Our method maintains a satisfying level of accuracy with low privacy loss.
Graph representation learning, aiming to learn low-dimensional representations which capture the geometric dependencies between nodes in the original graph, has gained increasing popularity in a variety of graph analysis tasks, including node classification and link prediction. Existing representation learning methods …
Detects graph topology changes from noisy signals using prior spectral information.
problem Detecting changes in graph topology from graph signals.
method Leverages graph filtering and subspace detection to distill problem into a CUSUM-based algorithm.
result Demonstrates the effectiveness of incorporating prior spectral signatures for change-point detection.
Geometric approach clusters intersecting manifolds with high probability.
problem Clustering intersecting d-dimensional manifolds.
method Compute locality graph on d-simplices using dihedral angles, then compute LAPD to separate manifold components.
result The method separates manifold components with high probability under random sampling.
Graph neural networks have become one of the most important techniques to solve machine learning problems on graph-structured data. Recent work on vertex classification proposed deep and distributed learning models to achieve high performance and scalability. However, we find that the feature vectors of benchmark datas…
AdarGCN tackles noisy web images in few-shot learning.
problem Few-shot learning with limited training samples from both source and target classes.
method AdarGCN combines LDN for web image denoising and GCN for FSL, using adaptive aggregation.
result AdarGCN outperforms conventional methods in FSFSL and conventional FSL settings.
Graphs are a central tool in machine learning and information processing as they allow to conveniently capture the structure of complex datasets. In this context, it is of high importance to develop flexible models of signals defined over graphs or networks. In this paper, we generalize the traditional concept of wide …
Novel Haar-Laplacian for directed graphs enhances spectral graph applications.
problem Lack of suitable Laplacian for directed graphs in spectral graph theory.
method Inspired by Haar-like transformation, introduces a Hermitian matrix preserving direction and weight.
result HaarNet outperforms in weight prediction and denoising on directed graphs.
Researchers create benchmarks to compare graph inference methods.
problem Comparing graph inference methods is difficult due to varying downstream tasks.
method Developed benchmarks for various graph tasks.
result Contrasted prominent graph inference techniques.
Paper compares optimal denoising methods for generative models, finding different results based on data regularity.
problem Optimizing denoising in score-based generative models for various data types.
method Comparison of full-denoising and half-denoising approaches, analyzing performance in terms of distribution distances.
result Different denoising methods perform better under different data regularity conditions.
A natural way to characterize the cluster structure of a dataset is by finding regions containing a high density of data. This can be done in a nonparametric way with a kernel density estimate, whose modes and hence clusters can be found using mean-shift algorithms. We describe the theory and practice behind clustering…
One of the cornerstones of the field of signal processing on graphs are graph filters, direct analogues of classical filters, but intended for signals defined on graphs. This work brings forth new insights on the distributed graph filtering problem. We design a family of autoregressive moving average (ARMA) recursions,…
Graph-based methods for signal processing have shown promise for the analysis of data exhibiting irregular structure, such as those found in social, transportation, and sensor networks. Yet, though these systems are often dynamic, state-of-the-art methods for signal processing on graphs ignore the dimension of time, tr…
In this work, we provide a new formulation for Graph Convolutional Neural Networks (GCNNs) for link prediction on graph data that addresses common challenges for biomedical knowledge graphs (KGs). We introduce a regularized attention mechanism to GCNNs that not only improves performance on clean datasets, but also favo…
Efficiently learns deep factor graphs using Gaussian belief propagation.
problem Learning in deep factor graphs with efficient inference.
method Treats all relevant quantities as random variables, uses belief propagation for inference.
result Efficiently solves training and prediction problems in deep factor graphs with belief propagation.
Unified method for simultaneous denoising and clustering.
problem Clustering noisy signals.
method Sparse convex wavelet clustering with fusion and group-sparse penalties.
result Unified approach that denoises and clusters simultaneously.
DDPD separates generation into planning and denoising for improved efficiency.
problem Efficiently denoise corrupted data during generation.
method Separates generation into a planner and denoiser, selecting denoising positions based on corruption severity.
result DDPD outperforms traditional methods on language and image generation benchmarks.
Proposes a new graph trend filtering model for inhomogeneous graph signals.
problem Estimating piecewise smooth signals over a graph with varying smoothness levels.
method Introduces a l2,0 norm penalized Graph Trend Filtering (GTF) model and two solution methods: spectral decomposition and simulated annealing.
result The GTF model performs better than existing approaches in denoising, support recovery, and semi-supervised classification.
Improved self-supervised denoising for Poisson-Gaussian noise.
problem Handling Poisson-Gaussian noise in self-supervised denoising.
method Extended blindspot model, improved training scheme without hyperparameters.
result Improved denoising performance on microscope image benchmarks.
We consider the problem of estimating a low-rank matrix from a noisy observed matrix. Previous work has shown that the optimal method depends crucially on the choice of loss function. In this paper, we use a family of weighted loss functions, which arise naturally for problems such as submatrix denoising, denoising wit…
Image denoising is an important pre-processing step in medical image analysis. Different algorithms have been proposed in past three decades with varying denoising performances. More recently, having outperformed all conventional methods, deep learning based models have shown a great promise. These methods are however …
Graph neural networks (GNNs) are shown to be successful in modeling applications with graph structures. However, training an accurate GNN model requires a large collection of labeled data and expressive features, which might be inaccessible for some applications. To tackle this problem, we propose a pre-training framew…
Gen-CUDE is a neural network for denoising noisy channels.
problem Denoising in finite-input, general-output noisy channels.
method Unsupervised neural network trained on noisy data.
result Gen-CUDE achieves better denoising results than other methods.
GDiff tackles blind denoising with Gibbs sampling and Monte Carlo inference.
problem Blind denoising of signals with unknown noise parameters.
method Gibbs Diffusion (GDiff) method that alternates sampling steps from a conditional diffusion model and a Monte Carlo sampler.
result GDiff achieves blind denoising of natural images and cosmic microwave background data.