Tiered latent representations and latent spaces for molecular graphs provide a simple but effective way to explicitly represent and utilize groups (e.g., functional groups), which consist of the atom (node) tier, the group tier and the molecule (graph) tier. They can be learned using the tiered graph autoencoder archit…
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A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
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48 results for “geometric function autoencoder”
GeoFunFlow: Geometric Function Flow Matching for Inverse Operator Learning over Complex Geometriescs.LG
GeoFunFlow tackles inverse problems on complex geometries with efficient learning.
problem Challenges in inverse problems governed by PDEs, especially on irregular geometries.
method Combines geometric function autoencoder and latent diffusion model trained via rectified flow.
result Achieves state-of-the-art reconstruction accuracy and efficient inference.
GD-VAEs learn dynamics from observations using geometric and topological information.
problem Learning parsimonious representations of nonlinear dynamics from observations.
method Develops data-driven methods incorporating geometric and topological information using Variational Autoencoders (VAEs).
result GD-VAEs provide methods for learning reduced dimensional representations of nonlinear dynamics.
Geometric interpretation improves VAE performance and robustness.
problem Improving Variational Autoencoder performance and robustness.
method Introducing a geometric perspective on VAEs, sampling from the Riemannian latent space.
result Improved generation and interpolations with competitive or better performance on benchmark datasets.
New method uses random convex polytopes to measure representation quality.
problem Measuring the quality of deep learning representations.
method Random Polytope Descriptor method based on random convex polytopes.
result Regularization in autoencoders can degrade out-of-distribution detection.
Unsupervised mesh disentanglement separates identity and pose.
problem Geometric disentanglement for 3D deformable models.
method CFAN-VAE architecture using conformal factor and normal features.
result CFAN-VAE achieves state-of-the-art performance on unsupervised geometric disentanglement.
In this paper we study generative modeling via autoencoders while using the elegant geometric properties of the optimal transport (OT) problem and the Wasserstein distances. We introduce Sliced-Wasserstein Autoencoders (SWAE), which are generative models that enable one to shape the distribution of the latent space int…
A deep learning model organizes RNA graphs to reveal folding patterns and properties.
problem Organizing and understanding the complex folding patterns of RNA secondary structures.
method Geometric scattering autoencoder (GSAE) network for learning graph embeddings.
result GSAE accurately reflects bistable RNA structures and can sample new folding trajectories.
SAEs struggle with curved activation manifolds, revealing layer-dependent scaling laws.
problem Sparse autoencoders' reconstruction error varies across layers, not fitting existing scaling laws.
method Cross-layer study of 844 SAE checkpoints, fitting and regressing on manifold geometry.
result Manifold geometry predicts layer-dependent width exponents in SAEs, with transferable coefficients.
AEN-SAEs address feature starvation in sparse autoencoders by stabilizing the geometric alignment of sparse coding.
problem Feature starvation in sparse autoencoders, leading to unstable and misaligned representations.
method Adaptive Elastic Net SAEs (AEN-SAEs) combine and terms to stabilize the sparse coding map and control feature interactions.
result AEN-SAEs mitigate feature starvation without heuristic resampling, maintaining competitive reconstruction abilities.
A new model for multiview data analysis using graph autoencoders.
problem Nonlinear multiview canonical correlation analysis for large datasets.
method Variational approach with graph convolutional neural networks.
result Competitive performance on classification, clustering, and recommendation tasks.
A standard Variational Autoencoder, with a Euclidean latent space, is structurally incapable of capturing topological properties of certain datasets. To remove topological obstructions, we introduce Diffusion Variational Autoencoders with arbitrary manifolds as a latent space. A Diffusion Variational Autoencoder uses t…
Develops VAEs for learning complex physical systems from data.
problem Learning low-dimensional representations of nonlinear physical systems.
method Variational Autoencoders with manifold latent spaces.
result Effective in learning nonlinear Burgers equation and constrained mechanical systems.
We propose a method to learn object representations from 3D point clouds using bundles of geometrically interpretable hidden units, which we call geometric capsules. Each geometric capsule represents a visual entity, such as an object or a part, and consists of two components: a pose and a feature. The pose encodes whe…
New function-space autoencoders improve data handling across resolutions.
problem Handling data as functions rather than discrete points.
method Introducing function-space autoencoders (FAE and FVAE) and neural operator architectures.
result Function-space autoencoders are more broadly applicable than variational autoencoders.
Paper proposes a new Autoencoder for robustly encoding white matter streamlines.
problem Limited Autoencoder architectures ignore global streamline geometry and lack interpretability.
method Introduces Differentiable Vector Quantized Variational Autoencoder (D-VQ-VAE) for entire streamline bundles.
result Demonstrates superior performance in encoding and synthesis compared to state-of-the-art Autoencoders.
Stacked Capsule Autoencodersstat.ML
Objects are composed of a set of geometrically organized parts. We introduce an unsupervised capsule autoencoder (SCAE), which explicitly uses geometric relationships between parts to reason about objects. Since these relationships do not depend on the viewpoint, our model is robust to viewpoint changes. SCAE consists …
The autoencoder is an effective unsupervised learning model which is widely used in deep learning. It is well known that an autoencoder with a single fully-connected hidden layer, a linear activation function and a squared error cost function trains weights that span the same subspace as the one spanned by the principa…
We develop VAE-DLM for dynamics with geometric flows in latent space.
problem Learning latent geometric properties for dynamics in high-dimensional data.
method Riemannian approaches to VAEs with a geometric flow in latent space, reformulating ELBO loss.
result Improved performance and robust learning for external dynamics, reducing OOD error.
Autoencoder-based geometric shaping is proposed that includes optimizing bit mappings. Up to 0.2 bits/QAM symbol gain in GMI is achieved for a variety of data rates and in the presence of transceiver impairments. The gains can be harvested with standard binary FEC at no cost w.r.t. conventional BICM.
Autoencoder Treescs.LG
We discuss an autoencoder model in which the encoding and decoding functions are implemented by decision trees. We use the soft decision tree where internal nodes realize soft multivariate splits given by a gating function and the overall output is the average of all leaves weighted by the gating values on their path. …
The choice of constellations largely affects the performance of communication systems. When designing constellations, both the locations and probability of occurrence of the points can be optimized. These approaches are referred to as geometric and probabilistic shaping, respectively. Usually, the geometry of the const…
Proposes a neural network autoencoder for smoothing and representation learning of functional data.
problem Lack of sufficient nonlinear representations in existing methods for functional data analysis.
method Develops a neural network autoencoder architecture to process functional data directly, learning both smoothing and representation.
result Outperforms traditional methods in prediction, classification, and computational efficiency.
The ability of deep neural networks to generalize well in the overparameterized regime has become a subject of significant research interest. We show that overparameterized autoencoders exhibit memorization, a form of inductive bias that constrains the functions learned through the optimization process to concentrate a…
VANO uses neural operators for unsupervised learning of functional data.
problem Learning operators between infinite dimensional spaces for functional data.
method Variational Autoencoding Neural Operators (VANO) approach.
result VANO can learn and reconstruct functional data without supervision.
The paper introduces a new divergence measure for variational autoencoders to improve reconstruction and generation.
problem Balancing reconstruction and generalizability in latent space of variational autoencoders.
method Presented a regularisation mechanism based on skew-geometric Jensen-Shannon divergence.
result The skew-geometric Jensen-Shannon divergence leads to better reconstruction and generation in variational autoencoders.
Improves latent space structure for better data representation.
problem Limited ability of conventional priors to encode data manifold structure.
method Introduces an Encoded Prior Sliced Wasserstein AutoEncoder with iterative training and geodesic interpolation.
result Learned manifold encoding preserves topological and geometric properties of data.
A new deep clustering model learns both clustering and embedding simultaneously.
problem Optimizing autoencoders for clustering and embedding separately.
method Integrating clustering module into a deep autoencoder.
result Joint learning of clustering and embedding improves performance.
A new modal autoencoder improves feature extraction by constraining the decoder.
problem Improving autoencoder performance through regularization.
method Proposed a modal autoencoder (MAE) by orthogonalizing the readout weight matrix.
result Extracted functionally independent features that perform better in classification tasks.
In this paper, we describe the "implicit autoencoder" (IAE), a generative autoencoder in which both the generative path and the recognition path are parametrized by implicit distributions. We use two generative adversarial networks to define the reconstruction and the regularization cost functions of the implicit autoe…
Paper uses autoencoders for efficient reduced-order modeling of eigenvalue problems.
problem Efficiently modeling eigenvalue problems in high dimensions.
method Autoencoder-based reduced-order modeling for eigenvalue problems.
result Autoencoder-based models outperform standard POD-Galerkin methods in neutron diffusion applications.
Proposes a new method for manifold alignment using geometry-regularized twin autoencoders.
problem Traditional MA methods lack out-of-sample extension and real-world applicability.
method Guided representation learning with geometry-regularized twin autoencoders.
result Improves cross-domain generalization and robustness while maintaining alignment fidelity.
In spite of achieving revolutionary successes in machine learning, deep convolutional neural networks have been recently found to be vulnerable to adversarial attacks and difficult to generalize to novel test images with reasonably large geometric transformations. Inspired by a recent neuroscience discovery revealing t…
Euclidean geometry has historically been the typical "workhorse" for machine learning applications due to its power and simplicity. However, it has recently been shown that geometric spaces with constant non-zero curvature improve representations and performance on a variety of data types and downstream tasks. Conseque…
This paper proposes the continuous semantic topic embedding model (CSTEM) which finds latent topic variables in documents using continuous semantic distance function between the topics and the words by means of the variational autoencoder(VAE). The semantic distance could be represented by any symmetric bell-shaped geo…
A new method integrates autoencoders with geometry regularization for manifold learning.
problem Extracting simplified low-dimensional representations that capture intrinsic geometry in data.
method Integrates autoencoders with a geometric regularization term based on diffusion potential distances.
result The method preserves intrinsic structure, enables out-of-sample extension, and faithful reconstruction.
LaMBO optimizes biological sequences using autoencoders and Bayesian optimization.
problem Bayesian optimization for drug design is limited by discrete, high-dimensional decision variables.
method Jointly trains denoising autoencoder with a Gaussian process head for gradient-based optimization in latent space.
result LaMBO outperforms genetic optimizers and requires no large pretraining corpus.
AEGCN uses autoencoder constraints to improve graph node classification.
problem Node classification on graph domains with reduced information loss.
method Autoencoder-constrained graph convolutional network (AEGCN).
result Adding autoencoder constraints significantly improves graph convolutional network performance.
Novel KAN-based autoencoder improves asset pricing models' accuracy and interpretability.
problem Improving asset pricing models' accuracy and interpretability.
method Kolmogorov-Arnold Networks (KANs) inspired autoencoder for latent factor exposures.
result Outperforms Multilayer Perceptrons in both accuracy and interpretability.
TES-AE uses tree grammars to speed up autoencoding for tree data.
problem Challenges in autoencoding tree data due to its non-vectorial and discrete nature.
method TES-AE combines reservoir computing with tree grammars for faster training.
result TES-AE outperforms D-VAE in speed and accuracy for tree data.
Deep Kernelized Autoencodersstat.ML
In this paper we introduce the deep kernelized autoencoder, a neural network model that allows an explicit approximation of (i) the mapping from an input space to an arbitrary, user-specified kernel space and (ii) the back-projection from such a kernel space to input space. The proposed method is based on traditional a…
VCAE improves autoencoder quality on MNIST and CelebA.
problem Overfitting and poor generative/reconstruction quality in autoencoders.
method Proposes variance-constrained autoencoder (VCAE) to enforce variance constraint on latent distribution.
result VCAE outperforms Wasserstein Autoencoder and Variational Autoencoder in quality.
GE-autoencoder identifies spontaneous symmetry breaking in systems.
problem Locating phase boundaries and identifying spontaneously broken symmetries in systems.
method Group-equivariant autoencoder using group theory to constrain parameters and learn invariant order parameters.
result GE-autoencoder accurately determines spontaneous symmetry breaking and estimates critical temperatures more efficiently.
In recent years Variation Autoencoders have become one of the most popular unsupervised learning of complicated distributions.Variational Autoencoder (VAE) provides more efficient reconstructive performance over a traditional autoencoder. Variational auto enocders make better approximaiton than MCMC. The VAE defines a …
This thesis builds theoretical foundations for deep learning, proving complexity theorems and training algorithms.
problem Rigorous explanation of deep learning's success and mathematical challenges.
method Developed circuit complexity theorems, classification theorems, and training algorithms for neural nets.
result Established the existence of high-complexity neural functions and provided rigorous proofs for training algorithms.
Graph semi-supervised learning classifies points on manifold using variational autoencoders and GNN.
problem Classifying points on low-dimensional manifolds using limited labeled data.
method Model data as points on a manifold, approximate manifold with VAE, construct geometric graph, solve semi-supervised node classification with GNN.
result Generalization gap diminishes with graph size and training procedure, vanishing asymptotically.
In Bayesian machine learning, the posterior distribution is typically computationally intractable, hence variational inference is often required. In this approach, an evidence lower bound on the log likelihood of data is maximized during training. Variational Autoencoders (VAE) are one important example where variation…
We propose a symmetric graph convolutional autoencoder which produces a low-dimensional latent representation from a graph. In contrast to the existing graph autoencoders with asymmetric decoder parts, the proposed autoencoder has a newly designed decoder which builds a completely symmetric autoencoder form. For the re…