New method learns DAGs from data without acyclicity constraint.
problem Learning DAGs from data without imposing acyclicity.
method Sparse matrix factorization and ℓ1-penalized optimization. result Empirical success in recovering true graphs and almost-DAG graphs.
A new method learns DAGs from Gaussian data without verifying acyclicity.
problem Learning DAGs from Gaussian data without verifying acyclicity.
method Relaxation technique for permutation matrix estimation and cyclic coordinatewise descent for sparse Cholesky factor estimation.
result The method recovers DAGs without verifying acyclicity constraints.
We introduce a novel class of labeled directed acyclic graph (LDAG) models for finite sets of discrete variables. LDAGs generalize earlier proposals for allowing local structures in the conditional probability distribution of a node, such that unrestricted label sets determine which edges can be deleted from the underl…
We investigate probabilistic graphical models that allow for both cycles and latent variables. For this we introduce directed graphs with hyperedges (HEDGes), generalizing and combining both marginalized directed acyclic graphs (mDAGs) that can model latent (dependent) variables, and directed mixed graphs (DMGs) that c…
Introduces m-connecting imset and factorization for ADMG models.
problem Handling latent confounding in DAG models.
method Introduces m-connecting imset and m-connecting factorization criterion for ADMG models.
result Equivalence of m-connecting factorization criterion to global Markov property.
Missing data is a pervasive problem in data analyses, resulting in datasets that contain censored realizations of a target distribution. Many approaches to inference on the target distribution using censored observed data, rely on missing data models represented as a factorization with respect to a directed acyclic gra…
This supplementary material includes three parts: some preliminary results, four examples, an experiment, three new algorithms, and all proofs of the results in the paper "Reversible MCMC on Markov equivalence classes of sparse directed acyclic graphs".
The paper tackles learning varying DAG structures based on contextual features.
problem Learning a single DAG for the entire population from observational data.
method A neural network that maps contextual features to a weighted adjacency matrix of a DAG, with a projection layer to ensure acyclicity.
result The new approach can recover context-specific DAGs where existing methods fail.
DAGgr aggregates multiple DAGs to stabilize causal structure learning.
problem Stability in learning causal structure from data.
method Model averaging of candidate DAGs weighted by predictive likelihood, with acyclicity enforced.
result DAGgr consistently outperforms individual DAGs and bootstrap-aggregation baselines.
ENCOD learns causal graphs efficiently without acyclicity constraints.
problem Learning causal graphical models from observational and interventional data.
method ENCOD uses optimization of edge likelihoods with separate orientation parameters.
result ENCOD efficiently recovers large graphs (hundreds of nodes) without acyclicity constraints.
We present a method to generate directed acyclic graphs (DAGs) using deep reinforcement learning, specifically deep Q-learning. Generating graphs with specified structures is an important and challenging task in various application fields, however most current graph generation methods produce graphs with undirected edg…
ProDAG uses variational inference to learn DAGs with uncertainty quantification.
problem Statistical and computational challenges in learning a single DAG from data.
method Bayesian variational inference framework with novel distributions.
result ProDAG outperforms state-of-the-art alternatives in accuracy and uncertainty quantification.
Neural networks with DAGs show linearity as width increases.
problem Understanding linearity in neural networks with arbitrary DAG structures.
method Analyzing the transition to linearity in networks with arbitrary DAGs, characterizing width by minimum in-degree.
result General neural networks with DAGs exhibit linearity as width approaches infinity.
Deep Gaussian Processes model functions on DAGs with partially observed data.
problem Reconstructing and inferring from partially observed functions on DAGs with noisy measurements.
method Place priors over functions on DAGs, theoretically study prior-collapse behavior, and offer a structured variational approximation.
result Almost-sure lower bounds on the preservation of input distinctions and interpretability of simulator hierarchies.
Develops a new method for learning non-parametric DAGs using RKHS.
problem Challenges of learning non-parametric causal models with large combinatorial search space.
method Uses reproducing kernel Hilbert spaces (RKHS) and sparsity-inducing regularization terms based on partial derivatives to enforce acyclicity.
result Shows improved performance through simulations and data analyses.
Study of Betti numbers in prodsimplicial complexes for directed graphs, focusing on DNA recombination.
problem Analyzing Betti numbers in directed graphs for DNA recombination.
method Custom prodsimplicial complexes for acyclic directed graphs, investigating Betti numbers.
result Investigated Betti numbers and cycles in prodsimplicial complexes for DNA recombination.
We introduce a new class of graphical models that generalizes Lauritzen-Wermuth-Frydenberg chain graphs by relaxing the semi-directed acyclity constraint so that only directed cycles are forbidden. Moreover, up to two edges are allowed between any pair of nodes. Specifically, we present local, pairwise and global Marko…
Paper proposes DAG-DB for learning discrete DAGs via backpropagation.
problem Learning Directed Acyclic Graphs (DAGs) from data.
method DAG-DB uses Discrete Backpropagation with I-MLE and Straight-Through Estimation.
result DAG-DB learns DAGs effectively using probabilistic sampling and backpropagation.
The paper shows that relaxing assumptions about causal graphs can lead to exponentially large equivalence classes.
problem The size of Markov equivalence classes under relaxed assumptions.
method Analytical proofs for three settings: sparse random directed acyclic graphs, uniformly random acyclic directed mixed graphs, and uniformly random directed cyclic graphs.
result Exponentially large lower bounds for the expected size of Markov equivalence classes.
Probabilistic inference in graphical models is the task of computing marginal and conditional densities of interest from a factorized representation of a joint probability distribution. Inference algorithms such as variable elimination and belief propagation take advantage of constraints embedded in this factorization …
Paper proposes methods to learn DAGs from partial orderings.
problem Learning DAGs from partial orderings is challenging.
method General estimation framework and efficient algorithms for low- and high-dimensional problems.
result Efficient estimation of DAGs from partial orderings is possible.
COSMO learns DAG structure without acyclicity constraints.
problem Learning DAG structure from data efficiently and without constraints.
method Differentiable approximation of smooth orientation matrix.
result COSMO converges to acyclic solutions without evaluating acyclicity.
PIVID infers DAG structures from data using variational inference and permutations.
problem Estimating the structure of Bayesian networks from observational data.
method PIVID uses variational inference and continuous relaxations of discrete distributions to infer a distribution over permutations and DAGs.
result PIVID outperforms deterministic and Bayesian approaches in estimating DAG structures from data.
New method discovers causal relationships in large-scale data.
problem Discovering causal relationships in large datasets with thousands of variables.
method Factor Directed Acyclic Graphs (f-DAGs) combined with continuous optimization.
result Achieved causal discovery on thousands of variables.
Paper constructs unfaithful probability distributions in binary causal graphs.
problem Unfaithful probability distributions in binary causal graphs.
method Constructs unfaithful probability distributions in binary causal graphs.
result Examples of unfaithful probability distributions in binary causal graphs.
Unified framework for clustering and learning causal graphs across subjects.
problem Bias and obscured subpopulation-specific dependencies in multivariate systems.
method Directed Acyclic Graph-based Dependency Clustering via Alternating Direction Method of Multipliers (DAG-DC-ADMM) integrated with Structural Equation Modeling (SEM).
result Unified framework recovers cluster-specific causal dependency structures with high true positive rate and low false discovery rate.
DAGSurv uses deep neural networks to analyze survival data based on causal graphs.
problem Analyzing survival data with causal relationships between variables.
method Variational inference-based conditional variational autoencoder for causal structured survival prediction.
result DAGSurv outperforms other survival analysis methods in predicting time-to-event.
Proposes an approach to ensure acyclic graphs in Bayesian structure learning.
problem Ensuring acyclic graphs in Bayesian structure learning.
method Integration of knowledge from topological orderings to constrain acyclicty.
result Outperforms related Bayesian score-based approaches in experiments.
Gaussian graphical models are semi-algebraic subsets of the cone of positive definite covariance matrices. Submatrices with low rank correspond to generalizations of conditional independence constraints on collections of random variables. We give a precise graph-theoretic characterization of when submatrices of the cov…
ALIAS uses RL to learn DAGs without acyclicity constraints.
problem Efficiently learning DAGs from observational data without acyclicity constraints.
method ALIAS employs RL to generate DAGs in a single step with optimal complexity, bypassing acyclicity constraints.
result ALIAS outperforms state-of-the-art methods in causal discovery.
This paper considers the problem of estimating the structure of multiple related directed acyclic graph (DAG) models. Building on recent developments in exact estimation of DAGs using integer linear programming (ILP), we present an ILP approach for joint estimation over multiple DAGs, that does not require that the ver…
This dissertation uses ILP to learn Bayesian network structures efficiently.
problem Learning the structure of Bayesian networks from data.
method Integer Linear Programming formulation with cluster constraints and cutting planes.
result The approach finds feasible solutions for Bayesian network structures efficiently.
Identifies causal effects in partially directed acyclic graphs with observed variables.
problem Identifying conditional causal effects in graphs with background knowledge and observed variables.
method Three results: identification formula, do calculus generalization, and algorithm completeness.
result Complete algorithm for identifying conditional effects in MPDAGs.
Directed acyclic graphs (DAGs) are a popular framework to express multivariate probability distributions. Acyclic directed mixed graphs (ADMGs) are generalizations of DAGs that can succinctly capture much richer sets of conditional independencies, and are especially useful in modeling the effects of latent variables im…
New method resolves inconsistency in learning directed acyclic graphs using penalized likelihood.
problem Inconsistency of ℓ1-penalized likelihood in learning directed acyclic graphs. method Developed a hybrid differentiable structure learning method based on ℓ0-penalized likelihood with hard acyclicity constraint. result Demonstrated and explained why ℓ1-penalized likelihood is fundamentally inconsistent in identifying true structure up to Markov equivalence classes. We explore non-acyclic GFlowNets in discrete settings.
problem Training and understanding non-acyclic GFlowNets in discrete environments.
method Relaxing acyclicity assumption, simpler theoretical framework, novel theoretical insights, experimental validation.
result Theoretical and experimental validation of non-acyclic GFlowNets in discrete environments.
The paper proposes using low rank assumption to improve causal structure learning in DAGs.
problem Challenges in learning causal structures in high-dimensional, non-sparse DAGs.
method Exploits low rank assumption of DAG adjacency matrix to adapt causal structure learning methods.
result Maximum rank is highly related to hubs, suggesting low rank for scale-free networks.
Directed acyclic graphs are the basic representation of the structure underlying Bayesian networks, which represent multivariate probability distributions. In many practical applications, such as the reverse engineering of gene regulatory networks, not only the estimation of model parameters but the reconstruction of t…
CaTs use DAGs with transformers to enforce causal constraints, improving neural network robustness.
problem Neural networks lack inherent causal structure respect, leading to reliability issues.
method Introducing Causal Transformers (CaTs) that operate under predefined causal constraints specified by DAGs.
result CaTs improve robustness and interpretability of neural networks under causal constraints.
Directed graphs occur throughout statistical modeling of networks, and exchangeability is a natural assumption when the ordering of vertices does not matter. There is a deep structural theory for exchangeable undirected graphs, which extends to the directed case via measurable objects known as digraphons. Using digraph…
We propose two spectral algorithms for partitioning nodes in directed graphs respectively with a cyclic and an acyclic pattern of connection between groups of nodes. Our methods are based on the computation of extremal eigenvalues of the transition matrix associated to the directed graph. The two algorithms outperform …
This work presents entropic constraints from DAGs with hidden variables.
problem Characterizing causal relations in systems with hidden variables.
method Entropic inequality constraints derived from e-separation relations. result These constraints can learn about true causal models from observed data.
We consider the problem of learning causal directed acyclic graphs from an observational joint distribution. One can use these graphs to predict the outcome of interventional experiments, from which data are often not available. We show that if the observational distribution follows a structural equation model with an …
Paper proposes a fast algorithm to recover causal DAGs with latent variables.
problem Discovering causal relationships in the presence of latent variables.
method Cholesky factorization of covariance matrix with optimization for latent variables.
result The algorithm significantly outperforms previous methods in synthetic and real-world datasets.
Causal inference relies on the structure of a graph, often a directed acyclic graph (DAG). Different graphs may result in different causal inference statements and different intervention distributions. To quantify such differences, we propose a (pre-) distance between DAGs, the structural intervention distance (SID). T…
Graph structured data are abundant in the real world. Among different graph types, directed acyclic graphs (DAGs) are of particular interest to machine learning researchers, as many machine learning models are realized as computations on DAGs, including neural networks and Bayesian networks. In this paper, we study dee…
New method learns graph structure with hidden causes from observational data.
problem Learning the structure of linear non-Gaussian models with hidden causes.
method Augments hidden variable structure by learning multidirected edges and uses higher order cumulants.
result Correct structure recovery for bow-free acyclic mixed graphs with multi-directed edges.
This work improves policy-based training by proposing an evaluation balance objective for GFlowNets.
problem Reliable estimation of policy divergence under directed acyclic graphs remains challenging.
method Proposes an evaluation balance objective over partial episodes to measure policy divergence and improve policy-based training reliability.
result Evaluation balance strengthens policy-based training reliability and broadens its flexibility.