Supervised learning improves disease outbreak detection accuracy.
problem Early detection of infectious disease outbreaks to protect public health.
method Developed a supervised learning approach based on hidden Markov models for disease outbreak detection.
result Reduces false positive rate by up to 50% while maintaining sensitivity.
Processes such as disease propagation and information diffusion often spread over some latent network structure which must be learned from observation. Given a set of unlabeled training examples representing occurrences of an event type of interest (e.g., a disease outbreak), our goal is to learn a graph structure that…
In retrospective assessments, internet news reports have been shown to capture early reports of unknown infectious disease transmission prior to official laboratory confirmation. In general, media interest and reporting peaks and wanes during the course of an outbreak. In this study, we quantify the extent to which med…
Several problems such as network intrusion, community detection, and disease outbreak can be described by observations attributed to nodes or edges of a graph. In these applications presence of intrusion, community or disease outbreak is characterized by novel observations on some unknown connected subgraph. These prob…
TLRF improves timely COVID-19 outbreak detection with small sample size counties.
problem Balancing accuracy and speed in estimating COVID-19 case growth rates.
method Transfer Learning Random Forest (TLRF) framework for growth rate estimation.
result TLRF outperforms existing methods in predicting case growth rates and timely outbreak detection.
PHIBP predicts infectious disease outbreaks in sparse data regions.
problem Predicting outbreaks in regions with no historical data.
method Poisson Hierarchical Indian Buffet Process (PHIBP) framework.
result PHIBP provides accurate outbreak predictions and meaningful insights in sparse data settings.
Framework extracts symptoms from EHRs for rapid disease outbreak detection.
problem Extracting relevant data from unstructured medical texts.
method Conformal active learning for efficient data mining.
result Framework achieves strong performance with minimal manual labeling.
Improved outbreak detection using machine learning fusion of statistical algorithms.
problem Balancing detection of outbreaks with false alarms.
method Train a fusion classifier using p-values and additional features.
result Fusion classifier using p-values and additional features improves outbreak detection.
Many methods have been proposed for detecting emerging events in text streams using topic modeling. However, these methods have shortcomings that make them unsuitable for rapid detection of locally emerging events on massive text streams. We describe Spatially Compact Semantic Scan (SCSS) that has been developed specif…
Method predicts disease outbreaks using search logs, overcoming instability.
problem Predicting disease outbreaks from search logs is challenging due to short-term and long-term instability.
method Seasonal-adjustment method decomposes logs into seasonal, trend, and irregular components; feature selection method selects relevant search terms.
result Proposed method outperforms comparative methods in prediction accuracy for seven of ten diseases.
New method detects close contacts to prevent SARS-CoV-2 spread.
problem Detecting close contacts to prevent SARS-CoV-2 spread.
method Machine learning approach using BLE data.
result Reliable detection of close contacts reduces SARS-CoV-2 risk.
Paper presents a spatio-temporal Bayesian model for early detection of COVID-19 hotspots.
problem Understanding spatio-temporal dynamics of COVID-19 hotspots to prevent outbreaks.
method Spatio-temporal Bayesian framework with a zero-mean Gaussian process and non-stationary kernel function enhanced by deep neural networks.
result Model demonstrates superior hotspot-detection performance compared to baseline methods.
Machine learning predicts COVID-19 activity in China.
problem Real-time forecasting of COVID-19 activity in Chinese provinces.
method Combines mechanistic disease models with digital traces (internet searches, news alerts). Uses clustering and data augmentation techniques.
result Stable and accurate forecasts 2 days ahead of current time, outperforming baseline models in 27 out of 32 provinces.
Paper reproduces a kernel-based scan B-statistic for online change-point detection.
problem Continuous detection of distribution changes in online data streams.
method Efficient kernel-based scan B-statistic for online change-point detection.
result Scan B-statistic outperforms parametric methods in challenging scenarios.
Social media services such as Twitter are a valuable source of information for decision support systems. Many studies have shown that this also holds for the medical domain, where Twitter is considered a viable tool for public health officials to sift through relevant information for the early detection, management, an…
New methods solve graph sparsity optimization problems faster.
problem Complex graph sparsity optimization problems in disease outbreak monitoring and social network analysis.
method Stochastic variance-reduced gradient-based methods GraphSVRG-IHT and GraphSCSG-IHT.
result Our methods achieve linear convergence speed.
New method solves graph-structured sparsity problems efficiently.
problem Graph-structured sparsity optimization in complex models.
method Stochastic gradient-based approach for non-convex graph-structured sparsity.
result Linear convergence up to a constant error.
Algorithm estimates COVID-19 cases from phone calls.
problem Delay in confirming COVID-19 cases.
method Modeling calls as background plus signal, fitting data with high R2. result Algorithm estimates cases days before lab results.
Study forecasts cholera outbreaks in Malawi using dynamic models.
problem Cholera transmission forecasting in developing countries.
method Qualitative dynamics, Monte Carlo Markov Chain, sensitivity analysis, machine learning.
result Enhanced cholera forecasting models improve future trends prediction.
The detection of anomalous activity in graphs is a statistical problem that arises in many applications, such as network surveillance, disease outbreak detection, and activity monitoring in social networks. Beyond its wide applicability, graph structured anomaly detection serves as a case study in the difficulty of bal…
Study links public concern in Italy to financial markets worldwide.
problem Understanding public concern's impact on financial markets during pandemics.
method Used Google Trends data from YouTube, News, and Search to measure public concern and correlate it with stock index returns.
result Public concern in Italy drives concerns in other countries and explains stock index returns of multiple nations.
Proposes a test for shared information between time series and events.
problem Detecting extreme events in time series data.
method Non-parametric statistical test using multiple two-sample testing at increasing lags.
result Outperforms or matches related tests on various datasets.
Market trade-routes can support infectious-disease transmission, impacting biological populations and even disrupting causal trade. Epidemiological models increasingly account for reductions in infectious contact, such as risk-aversion behaviour in response to pathogen outbreaks. However, market dynamics clearly differ…
Rare diseases affect a relatively small number of people, which limits investment in research for treatments and cures. Developing an efficient method for rare disease detection is a crucial first step towards subsequent clinical research. In this paper, we present a semi-supervised learning framework for rare disease …
Model predicts COVID-19 spread with better accuracy than existing methods.
problem Limited daily samples in time for data-driven methods.
method Integrated spatiotemporal model combining epidemic differential equations and RNN.
result Model outperforms existing methods in forecasting cases.
The paper investigates model misspecification in Bayesian inference using neural networks.
problem Detecting model misspecification in Bayesian inference with neural networks.
method Conceptualized types of model misspecification and proposed an augmented optimization objective with MMD.
result MMD can detect potentially catastrophic misspecifications in Bayesian inference.
Ensemble classifier detects pneumonia patterns in chest CT images.
problem Manual and time-consuming diagnosis of pneumonia in chest CT images.
method Probabilistic Support Vector Machine (SVM) ensemble, kernel PCA, patch-based classification.
result 97.86% accuracy in pneumonia detection.
Deep learning boosts rare disease detection from medical claims.
problem Improving diagnosis and treatment of rare diseases.
method Generative adversarial networks (GANs) and recurrent neural networks for sequence modeling.
result Accurate prediction with 0.56 PR-AUC, outperforming benchmarks.
In this paper, we demonstrate the potential of applying Variational Autoencoder (VAE) [10] for anomaly detection in skin disease images. VAE is a class of deep generative models which is trained by maximizing the evidence lower bound of data distribution [10]. When trained on only normal data, the resulting model is ab…
EGDL predicts TB outbreaks with deep learning, integrating epidemiological models.
problem Predicting TB outbreaks with complex spatiotemporal dynamics.
method Modified MN-SIR model with Bayesian inference, deep neural networks.
result EGDL delivers robust and accurate TB outbreak predictions.
Paper proposes a graph neural network for accurate long-term ILI prediction.
problem Limited long-term prediction performance and spatio-temporal dependency in existing models.
method Cross-location attention based graph neural network (Cola-GNN) for time series embeddings and location aware attentions.
result Proposed method shows strong predictive performance and interpretable results for long-term epidemic predictions.
New anomaly estimator reduces bias in MLE for normally distributed data.
problem Bias in Maximum Likelihood Estimation of structured anomalies.
method Derive a new anomaly estimator using a mixture model.
result New estimator is asymptotically unbiased regardless of anomaly family size.
Unsupervised deep learning detects and localizes crop leaf diseases.
problem Automated detection and localization of crop diseases.
method Three types of autoencoders (CAE, CVAE, VQ-VAE) applied to an open-source dataset.
result VQ-VAE autoencoder outperforms in image reconstruction, anomaly removal, detection, and localization.
Proposes efficient sensitivity analysis for complex Bayesian models.
problem Inefficiency of sensitivity analyses in complex Bayesian models.
method SA-ABI: weight sharing and neural network rapid inference.
result Efficiently integrates sensitivity analyses into Bayesian inference.
Deep learning detects Crohn's disease in MRI images.
problem Detecting Crohn's disease in MRI images.
method Residual Networks for feature extraction and soft attention mechanisms for interpretability.
result Deep learning algorithms perform comparably to clinical standards with faster inference.
Alzheimer's disease (AD) is a degenerative brain disease impairing a person's ability to perform day to day activities. The clinical manifestations of Alzheimer's disease are characterized by heterogeneity in age, disease span, progression rate, impairment of memory and cognitive abilities. Due to these variabilities, …
Motivation: The rapid growth of diverse biological data allows us to consider interactions between a variety of objects, such as genes, chemicals, molecular signatures, diseases, pathways and environmental exposures. Often, any pair of objects--such as a gene and a disease--can be related in different ways, for example…
Study uses social media to analyze COVID-19 impact.
problem Understanding the global impact of COVID-19.
method Machine learning and linguistic tools to analyze social media posts.
result Automatic detection of positive reports of COVID-19.
AI improves healthcare diagnostics and predictions.
problem Data heterogeneity and model limitations in AI for health.
method Review of AI applications in health informatics.
result AI enhances disease diagnosis and prediction.
We develop an algorithm that can detect pneumonia from chest X-rays at a level exceeding practicing radiologists. Our algorithm, CheXNet, is a 121-layer convolutional neural network trained on ChestX-ray14, currently the largest publicly available chest X-ray dataset, containing over 100,000 frontal-view X-ray images w…
Method detects airway dilatation with high accuracy.
problem Detecting airway dilatation in lung diseases like IPF.
method Probabilistic model of abrupt relative variations, Bayesian Changepoint Detection.
result Model detects airway dilatation with 2.5mm accuracy.
Improved CNNs detect Alzheimer's with 14% accuracy boost.
problem Early detection of Alzheimer's Disease using MRI scans.
method Optimized 3D CNNs with instance normalization, spatial downsampling, model widening, and age information.
result 14% increase in test accuracy distinguishing AD, MCI, and controls.
Deep learning model improves X-ray disease detection accuracy in Thai patients.
problem Lack of large-scale validation of AI algorithms for medical image diagnosis in Thailand.
method Development and testing of a deep learning algorithm using 421,859 local chest radiographs.
result Convolutional neural networks achieve remarkable performance in detecting 13 common abnormality conditions on chest X-ray.
We approach the development of models and control strategies of susceptible-infected-susceptible (SIS) epidemic processes from the perspective of marked temporal point processes and stochastic optimal control of stochastic differential equations (SDEs) with jumps. In contrast to previous work, this novel perspective is…
This paper compares ML models for predicting COVID-19 trends.
problem Forecasting the spread of COVID-19 to reduce its impact.
method Applied ARDL method to identify relationships, then used ML models (SVM, RF, KNN, ANN) for prediction.
result Models accurately forecasted COVID-19 cases with low MAPE.
Deep RNN detects FoG episodes in Parkinson's disease with high accuracy.
problem Detecting freezing episodes in Parkinson's disease patients.
method Deep Recurrent Neural Network (RNN) with Long Short-Term Memory cells on 3D-accelerometer measurements.
result Frequency domain features from trunk sensor achieve an AUC score of 93% in subject-independent method.
Enhances weather detection by learning from auxiliary information.
problem Mispredictions in unsupervised severe weather detection.
method Learning joint representations of textual and weather data.
result Improved decision boundaries for severe weather detection.
Study on financial impacts of zombie outbreak on economy.
problem Financial and economic consequences of a zombie epidemic.
method Epidemiological modeling and financial computation.
result GDP losses of 23.44% and financial market drop of 29.30% in a major industrialized nation.