Researchers identify critical protein residues using advanced graph theory.
arXiv research
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Critical graphs of quadratic differentials equidistribute in moduli space.
Study classifies Morse functions with 4 critical points on immersed 2-spheres.
New result on critical points of Bethe free energy under deformation retracts.
Optimizing quantum graphs yields geodesic nets on surfaces.
We study the problem of detecting critical structures using a graph embedding model. Existing graph embedding models lack the ability to precisely detect critical structures that are specific to a task at the global scale. In this paper, we propose a novel graph embedding model, called the Ego-CNNs, that employs the eg…
The Kac-Ward formula allows to compute the Ising partition function on any finite graph G from the determinant of 2^{2g} matrices, where g is the genus of a surface in which G embeds. We show that in the case of isoradially embedded graphs with critical weights, these determinants have quite remarkable properties. Firs…
In the present paper we introduce Mobius energy for the embedded graphs and formulate its main properties. This energy is invariant under the action of the group generated by all inversions in three-dimensional real space. We study critical configurations for the angles at vertices of degree less than five, and discuss…
We study the set of critical exponents of discrete groups acting on regular trees. We prove that for every real number between and , there is a discrete subgroup acting without inversion on a -regular tree whose critical exponent is equal to . Explicit construction of edge-index…
AgraSSt assesses graph generators using Stein operators and kernel discrepancies.
We give an alternative proof of that a critical knot of a Morse-Bott function is a graph knot where the critical set of is a link in . Our proof inducts on the number of index-1 critical knots of .
The paper studies harmonic graphs in the Heisenberg group and their properties.
Study critical exponents on hyperbolic surfaces with long boundaries using Weil-Petersson measures.
Classifies critical complexes for embedding in 3-sphere.
Let be an orientation-preserving branched covering map of degree , and let be an oriented Jordan curve passing through the critical values of . Then is an oriented graph on the sphere. In a group email discussion in Fall 2010, W. Thurston introduced balanced planar graphs a…
The paper explores the structure of Reeb spaces for smooth functions on manifolds.
We present the complete analytical classification of the atoms arising at the critical points of rank 1 of the Kowalevski-Yehia gyrostat. To classify the Smale-Fomenko diagrams, all separating values of the gyrostatic momentum are found. We present a kind of constructor of the Fomenko graphs; its application gives the …
To each isolated critical point of a smooth function on a 3-manifold we put in correspondence a tree (graph without cycles). We will prove that functions are topologically equivalent in the neighborhoods of critical points if and only if the corresponding trees are isomorphic. A complete topological invariant of functi…
Geodesic nets on flat spheres are studied using Gauss-Bonnet theorem.
Multilayer graphs are commonly used for representing different relations between entities and handling heterogeneous data processing tasks. New challenges arise in multilayer graph clustering for assigning clusters to a common multilayer node set and for combining information from each layer. This paper presents a theo…
DeepPocket uses graph convolutional reinforcement learning for better financial portfolio management.
The counting function on the natural numbers defines a discrete Morse-Smale complex with a cohomology for which topological quantities like Morse indices, Betti numbers or counting functions for critical points of Morse index are explicitly given in number theoretical terms. The Euler characteristic of the Morse filtra…
Develops structured noise for more accurate graph classifier robustness certificates.
This paper considers a distributed reinforcement learning problem in which a network of multiple agents aim to cooperatively maximize the globally averaged return through communication with only local neighbors. A randomized communication-efficient multi-agent actor-critic algorithm is proposed for possibly unidirectio…
The paper classifies surfaces formed by quadrilateral gluings.
Method reconstructs financial networks from aggregate data, revealing critical link density.
Critical nets in (sometimes called geodesic nets) are embedded graph with the property that their embedding is a critical point of the total (edge) length functional and under the constraint that certain 1-valent vertices (leaves) have a fixed position. In contrast to what happens on generic manifolds, w…
Study on Monge-Ampère equations with polynomial growth rates.
3D manifolds can map to a plane with specific curve patterns.
We prove the existence of Veech groups having a critical exponent strictly greater than any elementary Fuchsian group (i.e. ) but strictly smaller than any lattice (i.e. ). More precisely, every affine covering of a primitive L-shaped Veech surface ramified over the singularity and a non-periodic …
New separation concepts for Anosov representations help bound Thurston asymmetric metric.
The paper connects reflection groups to maps with specific dynamical properties.
Recently many efforts have been made to incorporate persistence diagrams, one of the major tools in topological data analysis (TDA), into machine learning pipelines. To better understand the power and limitation of persistence diagrams, we carry out a range of experiments on both graph data and shape data, aiming to de…
This paper improves GNN efficiency for large-scale graph applications.
We investigate the problem of the realization of a given graph as the Reeb graph of a smooth function with finitely many critical points, where is a closed manifold. We show that for any and any graph admitting the so called good orientation there exis…
This work analyzes SGGMs, offering convergence insights and practical design tips.
Graph convolutional networks (GCNs) are vulnerable to perturbations of the graph structure that are either random, or, adversarially designed. The perturbed links modify the graph neighborhoods, which critically affects the performance of GCNs in semi-supervised learning (SSL) tasks. Aiming at robustifying GCNs conditi…
We establish area bounds for two-dimensional immersions in R^3 and R^n. Namely, for μ-stable immersions in R^3 (R^n), for graphs in which solve quasilinear equations in divergence form, and for graphs which are critical for Fermat-type variational problems in R^n.
We obtain area growth estimates for constant mean curvature graphs in -spaces with , by finding sharp upper bounds for the volume of geodesic balls in . We focus on complete graphs and graphs with zero boundary values. For instance, we prove that entire graphs in $\mathbb{E}(κ…
Deep Graph Neural Networks (GNNs) are useful models for graph classification and graph-based regression tasks. In these tasks, graph pooling is a critical ingredient by which GNNs adapt to input graphs of varying size and structure. We propose a new graph pooling operation based on compressive Haar transforms -- HaarPo…
This paper analyzes various graph clustering methods and their applications.
New method improves graph neural networks by considering different types of relations in sampling.
To deepen our understanding of graph neural networks, we investigate the representation power of Graph Convolutional Networks (GCN) through the looking glass of graph moments, a key property of graph topology encoding path of various lengths. We find that GCNs are rather restrictive in learning graph moments. Without c…
We compare two combinatorial models for the moduli space of two-dimensional cobordisms: Bödigheimer's radial slit configurations and Godin's admissible fat graphs, producing an explicit homotopy equivalence using a "critical graph" map. We also discuss natural compactifications of these two models, the unilevel harmoni…
Graph Convolutional Neural Networks (GCNNs) extend classical CNNs to graph data domain, such as brain networks, social networks and 3D point clouds. It is critical to identify an appropriate graph for the subsequent graph convolution. Existing methods manually construct or learn one fixed graph for all the layers of a …
Feature extraction and dimension reduction for networks is critical in a wide variety of domains. Efficiently and accurately learning features for multiple graphs has important applications in statistical inference on graphs. We propose a method to jointly embed multiple undirected graphs. Given a set of graphs, the jo…
Most previous studies on multi-agent reinforcement learning focus on deriving decentralized and cooperative policies to maximize a common reward and rarely consider the transferability of trained policies to new tasks. This prevents such policies from being applied to more complex multi-agent tasks. To resolve these li…
The zero locus of a function f on a graph G is defined as the graph with vertex set consisting of all complete subgraphs of G, on which f changes sign and where x,y are connected if one is contained in the other. For d-graphs, finite simple graphs for which every unit sphere is a d-sphere, the zero locus of (f-c) is a …