Motivation: Proteins are known to undergo conformational changes in the course of their functions. The changes in conformation are often attributable to a small fraction of residues within the protein. Therefore identification of these variable regions is important for an understanding of protein function. Results: We …
On-device research index
arXiv research
A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
168,742 papers · 148 categories
Trend · papers per month
48 results for “code changes”
Graph2Diff neural network predicts precise code changes for build errors.
problem Fixing build errors in software development.
method Represented code and errors as graphs, used Graph Neural Network to predict precise diffs.
result Graph2Diff achieves over double the accuracy of DeepDelta in predicting precise code changes.
Although deep learning has shown great success in recent years, researchers have discovered a critical flaw where small, imperceptible changes in the input to the system can drastically change the output classification. These attacks are exploitable in nearly all of the existing deep learning classification frameworks.…
Paper proposes a novel approach to improve spatiotemporal precipitation forecasts.
problem Improving accuracy of spatiotemporal precipitation forecasts for flood damage mitigation.
method Introduces a rain-code fusion approach using ConvLSTM and multi-frame fusion for spatiotemporal precipitation code-to-code forecasting.
result Demonstrates enhanced accuracy in precipitation forecasts beyond 3 timesteps using the rain-code fusion.
Study makes code models robust to small changes that keep functionality.
problem Vulnerability of deep neural networks to adversarial examples in source code.
method Defined a powerful adversary and adversarial training to learn robust models.
result Significant gains in robustness demonstrated across different languages and architectures.
PPC detects anomalies in high-dimensional data efficiently.
problem Scalability issues and reduced performance with high-dimensional data.
method Probabilistic Predictive Coding (PPC) learns latent representations and predicts uncertainties.
result PPC achieves linear time complexity and high adaptability.
Machine learning models that take computer program source code as input typically use Natural Language Processing (NLP) techniques. However, a major challenge is that code is written using an open, rapidly changing vocabulary due to, e.g., the coinage of new variable and method names. Reasoning over such a vocabulary i…
Stock Market Visualizationq-fin.PM
We provide complete source code for a front-end GUI and its back-end counterpart for a stock market visualization tool. It is built based on the "functional visualization" concept we discuss, whereby functionality is not sacrificed for fancy graphics. The GUI, among other things, displays a color-coded signal (computed…
Paper detects hierarchical changes in latent variable models from data streams.
problem Detecting changes at three levels: data distribution, latent variables, and number of latent variables.
method Information-theoretic framework using MDL and DNML for change detection.
result Effective in detecting changes with good interpretability.
HECT tests climate model outputs for reproducibility.
problem Ensuring climate models accurately reflect physical processes.
method Probabilistic classifiers for high-dimensional spatio-temporal data.
result A principled way to assess statistical reproducibility of climate models.
DoWhy-GCM extends causal inference in graphical models for diverse queries.
problem Addressing diverse causal queries in graphical causal models.
method Specify cause-effect relations via a causal graph, fit causal mechanisms, pose causal queries.
result Identification of root causes, attribution of causal influences, diagnosis of causal structures.
The process of morphogenesis, which can be defined as an evolution of the form of an organism, is one of the most intriguing mysteries in the life sciences. It is clear, that gene expression patterns cannot explain the development of the precise geometry of an organism and its parts in space. Here, we suggest a set of …
A conjugate Bayesian method detects change points in Hawkes processes efficiently.
problem Non-conjugacy between Hawkes process likelihood and prior causes inefficiency in change point detection.
method Data augmentation to propose a conjugate Bayesian two-step change point detection method.
result The conjugate method is more accurate and efficient than non-conjugate methods.
Hamiltonian in Financial Marketscond-mat.stat-mech
A statistical physics model for the time evolutions of stock portfolios is proposed. In this model the time series of price changes are coded into the sequences of up and down spins. The Hamiltonian of the system is introduced and is expressed by spin-spin interactions as in spin glass models of disordered magnetic sys…
New method improves image compression using bits-back coding.
problem Lossy image compression with deep latent variable models.
method Iterative inference, stochastic annealing, bits-back coding.
result New state-of-the-art performance on lossy image compression.
Unsupervised framework learns latent codes for controllable generation.
problem Challenging to achieve controllable generation with GANs.
method Self-training iterative feedback from discriminator to generator.
result Better disentanglement and semantic meaningful latent codes.
Defense against adversarial attacks by manipulating feature thickness.
problem Vulnerability of machine learning models to adversarial attacks.
method Feature Manipulation (FM)-Defense using a combo-variational autoencoder.
result Detection and purification of adversarial examples with high accuracy.
Excessively changing policies in many real world scenarios is difficult, unethical, or expensive. After all, doctor guidelines, tax codes, and price lists can only be reprinted so often. We may thus want to only change a policy when it is probable that the change is beneficial. In cases that a policy is a threshold on …
Decodes neural activity to detect context effects in natural settings.
problem Detecting context-dependent changes in neural encoding.
method Decoding-based approach controlling for confounding factors.
result Demonstrates context-dependent changes in neural encoding.
Study finds billing codes at IPO boost digital health companies' financial performance.
problem Identifying factors that drive long-term financial success in digital health companies.
method Analyzed 33 digital health IPOs from 2010-2021, comparing companies with and without billing codes.
result Companies with billing codes at IPO were significantly more likely to achieve positive CAGR and higher market capitalization.
New CUSUM method detects changes in Hawkes networks efficiently.
problem Detecting abrupt changes in Hawkes networks.
method Efficient online recursive implementation of CUSUM statistic.
result Proposed CUSUM method outperforms existing methods.
New algorithm for multi-player bandits with collision-dependent rewards.
problem Stochastic multi-player multi-armed bandits with collision-dependent reward distributions.
method Error-Correction Collision Communication (EC3) algorithm.
result EC3 algorithm achieves optimal regret approaching centralized MP-MAB regret.
Many computationally-efficient methods for Bayesian deep learning rely on continuous optimization algorithms, but the implementation of these methods requires significant changes to existing code-bases. In this paper, we propose Vprop, a method for Gaussian variational inference that can be implemented with two minor c…
Study shows code-level optimizations significantly impact deep RL algorithms.
problem Understanding the impact of implementation details on deep RL algorithms.
method Case study on PPO and TRPO, investigating the effects of code-level optimizations.
result Code-level optimizations are crucial for performance in deep RL algorithms.
GradPower speeds up language model training with minimal code changes.
problem Slower training of large language models.
method Elementwise sign-power transformation applied to gradients.
result Consistently lower terminal loss across various models and datasets.
Spiking neural networks (SNNs) could play a key role in unsupervised machine learning applications, by virtue of strengths related to learning from the fine temporal structure of event-based signals. However, some spike-timing-related strengths of SNNs are hindered by the sensitivity of spike-timing-dependent plasticit…
A basic question in the theory of fault-tolerant quantum computation is to understand the fundamental resource costs for performing a universal logical set of gates on encoded qubits to arbitrary accuracy. Here we consider qubits encoded with constant space overhead (i.e. finite encoding rate) in the limit of arbitrari…
Paper constructs a CRRIX index to assess cryptocurrency market risks from regulatory changes.
problem Lack of indices quantifying regulatory risks in cryptocurrencies.
method CRRIX index based on news coverage frequency, using Latent Dirichlet Allocation and Hellinger distance.
result CRRIX successfully captures major policy-changing moments and synchronizes with market volatility.
The simulator is an R package that streamlines the process of performing simulations by creating a common infrastructure that can be easily used and reused across projects. Methodological statisticians routinely write simulations to compare their methods to preexisting ones. While developing ideas, there is a temptatio…
Prospective learning improves AI performance in changing conditions.
problem Machine learning algorithms struggle with changing data distributions and evolving goals.
method Developed a new mathematical framework called Prospective Learning.
result Preliminary results show improved algorithm performance and applicability to sequential decision-making.
AutoML struggles with climate change data, but offers potential improvements.
problem Improving machine learning for climate change applications.
method Benchmarked AutoML libraries on climate modeling, wind power, and catalyst discovery.
result Current AutoML techniques fail to surpass human-designed models in climate change applications.
AutoStan improves Bayesian models via predictive feedback.
problem Improving Bayesian models written in Stan.
method Iterative improvement of Stan models using NLPD and sampler diagnostics feedback.
result AutoStan can autonomously improve diverse Bayesian models across various structures.
Graphical models help infer domain adaptation across unknown distributions.
problem Unknown changes in joint distribution across domains.
method Use graphical models to encode and infer changes in data distribution.
result Automated domain adaptation framework improves posterior inference of target variable.
This handbook translates lead time analysis into R code.
problem Tracking divergence in booking lead times over time.
method Translated original article's methodology into R code.
result Demonstrated reproducibility and error bounds in lead time forecasts.
A model is developed to study the effectiveness of innovation and its impact on structure creation and structure change on agent-based societies. The abstract model that is developed is easily adapted to any particular field. In any interacting environment, the agents receive something from the environment (the other a…
Hybrid neural network infers states from black-box systems.
problem Inference of state models in black-box systems without source code instrumentation.
method Convolutional and recurrent layers learn correlations between time series signals.
result Improves state change point detection by up to 102%.
EVARS-GPR: EVent-triggered Augmented Refitting of Gaussian Process Regression for Seasonal Datacs.LG
EVARS-GPR refines Gaussian Process Regression for seasonal data with sudden scale changes.
problem Challenges in forecasting with changing system behavior over time.
method Combines online change point detection with data augmentation for refitting.
result 20.8% lower RMSE on real-world datasets compared to similar methods.
PANDA: Predicting the change in proteins binding affinity upon mutations using sequence informationq-bio.BM
PANDA predicts protein binding affinity changes from sequences, outperforming existing methods.
problem Accurately predicting changes in protein binding affinity due to mutations.
method Sequence-based machine learning approach using protein sequence information.
result PANDA achieves higher Pearson correlation coefficients than existing methods.
GCBS improves contrastive learning performance efficiently.
problem Efficiently mining hard negatives for contrastive learning.
method Global Contrastive Batch Sampling (GCBS) approximates batch assignment problem.
result GCBS improves state-of-the-art performance in sentence embedding and code-search tasks.
Deep neural network predicts health costs better than traditional models.
problem Accurate prediction of healthcare costs for optimal cost management.
method Developed a deep neural network to predict future health care costs from health insurance claims records.
result Deep neural network outperformed ridge regression and Morbi-RSA models in cost prediction.
Spherical data is found in many applications. By modeling the discretized sphere as a graph, we can accommodate non-uniformly distributed, partial, and changing samplings. Moreover, graph convolutions are computationally more efficient than spherical convolutions. As equivariance is desired to exploit rotational symmet…
Knot theory applied to proteins, distinguishing folded linear chains.
problem Classifying proteins as unknots when intra-chain interactions are ignored.
method Developing knot theory for folded linear molecular chains, considering self-bonding, and using Gauss codes and quandles.
result Extended knot theory to distinguish topologies of proteins with intra-chain bonds.
The paper predicts loss scaling across different datasets and compute scales.
problem Predicting loss scaling across different datasets and compute scales.
method Derive shifted power law relationships between train and test losses.
result Shifted power law relationships hold for various datasets and tasks, improving prediction accuracy.
Scene understanding and semantic segmentation are at the core of many computer vision tasks, many of which, involve interacting with humans in potentially dangerous ways. It is therefore paramount that techniques for principled design of robust models be developed. In this paper, we provide analytic and empirical evide…
Better data representations can simplify learning tasks by aligning model distributions with true data distributions.
problem Learning complexity influenced by the alignment of model distributions with true data distributions.
method Analyzed the effect of data representations on learning complexity using a task complexity score and information coding length.
result Better representations can simplify learning tasks by aligning model distributions with true data distributions, improving learning outcomes.
This paper uses natural language processing to create the first machine-coded democracy index, which I call Automated Democracy Scores (ADS). The ADS are based on 42 million news articles from 6,043 different sources and cover all independent countries in the 1993-2012 period. Unlike the democracy indices we have today…
Develops new methods to create imperceptible image changes that fool classifiers.
problem Improving the robustness of image classifiers by creating subtle changes undetectable to humans.
method Two methods: Edge-Aware and Color-Aware, designed to reduce detectability of image perturbations.
result Demonstrated that the new methods effectively cause misclassification and are computationally efficient.
Ordered phase and non-equilibrium fluctuation in stock marketcond-mat.stat-mech
We analyze the statistics of daily price change of stock market in the framework of a statistical physics model for the collective fluctuation of stock portfolio. In this model the time series of price changes are coded into the sequences of up and down spins, and the Hamiltonian of the system is expressed by spin-spin…