arXiv research

We introduce a property of mutation loops, called the sign stability, with a focus on an asymptotic behavior of the iteration of the tropical $\mathcal{X}$-transformation. A sign-stable mutation loop has a numerical invariant which we call the cluster stretch factor, in analogy with that of a pseudo-Anosov mapping clas…

For any quiver mutation sequence, we define a pair of matrices that describe a fixed point equation of a cluster transformation determined from the mutation sequence. We give an explicit relationship between this pair of matrices and the Jacobian matrix of the cluster transformation. Furthermore, we show that this rela…

We generalise surface cluster algebras to the case of infinite surfaces where the surface contains finitely many accumulation points of boundary marked points. To connect different triangulations of an infinite surface, we consider infinite mutation sequences. We show transitivity of infinite mutation sequences on tria…

We give a method to compute presentations of saturated cluster modular groups. Using this, we obtain finite presentations of the saturated cluster modular groups of finite mutation type $X_6$ and $X_7$. We verify that the cluster modular groups of finite mutation type $\widetilde{E}_6$, $\widetilde{E}_7$, $\widetilde{E…

We describe and investigate a connection between the topology of isolated singularities of plane curves and the mutation equivalence, in the sense of cluster algebra theory, of the quivers associated with their morsifications.

We apply our statistically deterministic machine learning/clustering algorithm *K-means (recently developed in https://ssrn.com/abstract=2908286) to 10,656 published exome samples for 32 cancer types. A majority of cancer types exhibit mutation clustering structure. Our results are in-sample stable. They are also out-o…

Analysis of somatic mutation profiles from cancer patients is essential in the development of cancer research. However, the low frequency of most mutations and the varying rates of mutations across patients makes the data extremely challenging to statistically analyze as well as difficult to use in classification probl…

An evolutionary algorithm (EA) is developed as an alternative to the EM algorithm for parameter estimation in model-based clustering. This EA facilitates a different search of the fitness landscape, i.e., the likelihood surface, utilizing both crossover and mutation. Furthermore, this EA represents an efficient approac…

Fixed points found in cluster modular groups under specific conditions.

A cluster variety of Fock and Goncharov is a scheme constructed from the data related to the cluster algebras of Fomin and Zelevinsky. A seed is a combinatorial data which can be encoded as an $n\times n$ matrix with integer entries, or as a quiver in special cases, together with $n$ formal variables. A mutation is a c…

Deep generative model for healthcare data identifies coherent substructures and mutational clusters.

We construct finite volume hyperbolic manifolds with large symmetry groups. The construction makes use of the presentations of finite Coxeter groups provided by Barot and Marsh and involves mutations of quivers and diagrams defined in the theory of cluster algebras. We generalize our construction by assigning to every …

Geometrically, Legendrian surfaces related by surgery have related skein-valued cluster spaces.

In this paper, we study the distribution of the genuses of cluster quivers of finite mutation type. First, we prove that in the $11$ exceptional cases, the distribution of genuses is $0$ or $1$. Next, we consider the relationship between the genus of an oriented surface and that of cluster quivers from this surface. It…

New knot invariants derived using quantum cluster algebras.

We try to give a cluster algebraic interpretation of complex volume of knots. We construct the R-operator from the cluster mutations, and we show that it is regarded as a hyperbolic octahedron. The cluster variables are interpreted as edge parameters used by Zickert in computing complex volume.

A cluster variety of Fock and Goncharov is a scheme constructed by gluing split algebraic tori, called seed tori, via birational gluing maps called mutations. In quantum theory, the ring of functions on seed tori are deformed to non-commutative rings, represented as operators on Hilbert spaces. Mutations are quantized …

Mutation graph of support τ-tilting modules over skew-gentle algebras is connected.

We construct geometric realization for non-exceptional mutation-finite cluster algebras by extending the theory of Fomin and Thurston to skew-symmetrizable case. Cluster variables for these algebras are renormalized lambda lengths on certain hyperbolic orbifolds. We also compute growth rate of these cluster algebras, p…

Framework uses machine learning to distinguish major COVID-19 variants.

In many real life problems, objects are described by large number of binary features. For instance, documents are characterized by presence or absence of certain keywords; cancer patients are characterized by presence or absence of certain mutations etc. In such cases, grouping together similar objects/profiles based o…

Quantum trace maps for surfaces are shown to be compatible under triangulations.

We prove the existence of Lagrangian fillings for $D_n$-type Legendrian links.

We study iteration maps of recurrence relations arising from mutation periodic quivers of arbitrary period. Combining tools from cluster algebra theory and (pre)symplectic geometry, we show that these cluster iteration maps can be reduced to symplectic maps on a lower dimensional submanifold, provided the matrix repres…

The paper proves there are many Lagrangian fillings for Legendrian links of affine type.

We present a global optimization algorithm for clustering data given the ratio of likelihoods that each pair of data points is in the same cluster or in different clusters. To define a clustering solution in terms of pairwise relationships, a necessary and sufficient condition is that belonging to the same cluster sati…

We use Bonahon-Wong's trace map to study character varieties of the once-punctured torus and of the 4-punctured sphere. We clarify a relationship with cluster algebra associated with ideal triangulations of surfaces, and we show that the Goldman Poisson algebra of loops on surfaces is recovered from the Poisson structu…

We propose a new description of 3d $\mathcal{N}=2$ theories which do not admit conventional Lagrangians. Given a quiver $Q$ and a mutation sequence $m$ on it, we define a 3d $\mathcal{N}=2$ theory $\mathcal{T}[(Q,m)]$ in such a way that the $S^3_b$ partition function of the theory coincides with the cluster partition f…

Characterizes pseudo-Anosov mapping classes on general marked surfaces.

Genus 2 mutation is the process of cutting a 3-manifold along an embedded closed genus 2 surface, twisting by the hyper-elliptic involution, and gluing back. This paper compares genus 2 mutation with the better-known Conway mutation in the context of knots in the 3-sphere. Despite the fact that any Conway mutation can …

New algebra for twice-punctured torus curves.

We construct tilting modules over Jacobian algebras arising from knots. To a two-bridge knot $L[a_1,\ldots,a_n]$, we associate a quiver $Q$ with potential and its Jacobian algebra $A$. We construct a family of canonical indecomposable $A$-modules $M(i)$, each supported on a different specific subquiver $Q(i)$ of $Q$. E…

Modeling correlated mutations in cancer for personalized treatment.

The study finds many Lagrangian fillings for Legendrian links of specific types.

Study of machine learning in quiver gauge theories and Seiberg duality.

The paper connects Legendrian links to cluster algebras via microlocal methods.

Improved genetic programming by optimizing mutation operators for continuous program search.

We define a link homology theory that is readily seen to be both isomorphic to reduced odd Khovanov homology and fully determined by data impervious to Conway mutation. This gives an elementary proof that odd Khovanov homology is mutation invariant, and therefore that mod 2 Khovanov homology is mutation invariant. We a…

Develops quantum cluster algebra approach to solve tetrahedron equation.

We give a new, elementary proof that Khovanov homology with $\mathbb{Z}/2\mathbb{Z}$--coefficients is invariant under Conway mutation. This proof also gives a strategy to prove Baldwin and Levine's conjecture that $δ$--graded knot Floer homology is mutation--invariant. Using the Clifford module structure on $\widetilde…

Mathematician summarizes protein geometry and mutation effects.

We study the effect of mutation on link concordance and 3-manifolds. We show that the set of links concordant to sublinks of homology boundary links is not closed under positive mutation. We show that mutation does not preserve homology cobordism classes of 3-manifolds. A significant consequence is that there exist 3-m…

This work constructs a finite-dimensional projective representation for a quantum Teichmüller model.

Khovanov homology invariant under Conway mutation.

This paper introduces Bounded Fuzzy Possibilistic Method (BFPM) by addressing several issues that previous clustering/classification methods have not considered. In fuzzy clustering, object's membership values should sum to 1. Hence, any object may obtain full membership in at most one cluster. Possibilistic clustering…

For a symmetrizable Kac-Moody Lie algebra $\mathfrak{g}$, we construct a family of weighted quivers $Q_m(\mathfrak{g})$ ($m \geq 2$) whose cluster modular group $Γ_{Q_m(\mathfrak{g})}$ contains the Weyl group $W(\mathfrak{g})$ as a subgroup. We compute explicit formulae for the corresponding cluster $\mathcal{A}$- and …

We present a consensus Monte Carlo algorithm that scales existing Bayesian nonparametric models for clustering and feature allocation to big data. The algorithm is valid for any prior on random subsets such as partitions and latent feature allocation, under essentially any sampling model. Motivated by three case studie…

The paper studies alternating links in thickened surfaces using flow lattices and disc mutations.