This research uses Siamese networks to identify partial mouse brain images from the Allen atlas.
problem Identifying precise mouse brain microscopy images from the Allen atlas.
method Siamese Networks with contrastive learning to find corresponding atlas plates for partial images.
result Siamese CNNs achieved 25% TOP-1 and 100% TOP-5 accuracy in identifying brain slices from the Allen atlas.
New brain atlas method improves classification accuracy.
problem Creating accurate brain atlases from connectomes.
method Connectivity-based hierarchical clustering and consensus aggregation.
result Consensus parcellation outperforms existing atlases in classification tasks.
SM-netFusion estimates brain network atlas by considering multiple topological measures.
problem Limited BNA estimation methods that overlook topological measures and lack discriminative power.
method Supervised multi-topology network cross-diffusion framework using degree, closeness, and eigenvector centrality measures.
result SM-netFusion produces more centered and representative templates, and improves classification accuracy.
Predict and classify brain image evolution trajectories from a single MRI timepoint.
problem Diagnosing early mild cognitive impairment (eMCI) from a single MRI scan.
method Supervised and unsupervised learning frameworks that predict and label intensity patch evolution trajectories from a baseline MRI.
result Classification accuracy increased by up to 10% points compared to single timepoint-based methods.
Study identifies key brain regions and model architectures for ASD diagnosis.
problem Subjective and time-consuming ASD diagnosis by clinicians.
method Comparative analysis of model architectures and atlas granularities.
result High-performing models use 2-4 hidden layers and 16-64 neurons per layer, and cerebellum is predictive of ASD.
Local semi-supervised method improves brain tissue classification in child MRI.
problem Inaccurate detection of brain tissue classes due to intensity variations in early developing brains.
method Kernel Fisher Discriminant Analysis (KFDA) combined with SSIM for perceptual image quality assessment.
result Optimal brain partitioning into subdomains with different average intensity values and separating surfaces between brain parts.
New GPU-based algorithm for fast optimal transport on brain tractograms.
problem Efficiently comparing and transferring labels in brain tractograms.
method Multiscale algorithm using Sinkhorn divergences on GPU.
result Smooth assignments for label transfer in tractograms.
We present a novel approach to automatically segment magnetic resonance (MR) images of the human brain into anatomical regions. Our methodology is based on a deep artificial neural network that assigns each voxel in an MR image of the brain to its corresponding anatomical region. The inputs of the network capture infor…
Probabilistic atlases provide essential spatial contextual information for image interpretation, Bayesian modeling, and algorithmic processing. Such atlases are typically constructed by grouping subjects with similar demographic information. Importantly, use of the same scanner minimizes inter-group variability. Howeve…
Semantic segmentation is an established while rapidly evolving field in medical imaging. In this paper we focus on the segmentation of brain Magnetic Resonance Images (MRI) into cerebral structures using convolutional neural networks (CNN). CNNs achieve good performance by finding effective high dimensional image featu…
Cataloging the neuronal cell types that comprise circuitry of individual brain regions is a major goal of modern neuroscience and the BRAIN initiative. Single-cell RNA sequencing can now be used to measure the gene expression profiles of individual neurons and to categorize neurons based on their gene expression profil…
Expanded Legendrian knot atlas for 10-arc index knots.
problem Lack of Legendrian knot data for knots with high arc index.
method Created an atlas of Legendrian knots up to arc index 10.
result Legendrian knots of arc index 10 have been cataloged.
New method clusters disease subtypes from model explanations.
problem Discovering disease subtypes in noisy, high-dimensional data.
method Train classifier, extract explanations, cluster in explanation space.
result Cluster analysis on model explanations outperforms classical methods.
Atlas models are systems of Ito processes with parameters that depend on rank. We show that the parameters of a simple Atlas model can be identified by measuring the variance of the top-ranked process for different sampling intervals.
Atlas-type models are constant-parameter models of uncorrelated stocks for equity markets with a stable capital distribution, in which the growth rates and variances depend on rank. The simplest such model assigns the same, constant variance to all stocks; zero rate of growth to all stocks but the smallest; and positiv…
A neural atlas simplifies 3D geometry simulation by avoiding meshing.
problem Simulation of complex 3D geometries with thin features or non-trivial topology.
method Learned geometric representation of overlapping volumetric coordinate charts, trained from point-cloud or level-set data.
result The learned atlas enables different solvers without re-meshing or re-parametrization.
Generative models learn manifold structure; new approach uses atlas and geodesic interpolation.
problem Challenges in representing manifolds with topology different from Euclidean space.
method Atlas Generative Models (AGMs) with hybrid latent spaces and geodesic interpolation.
result Geodesic interpolation can be extended to AGMs, improving manifold representation.
ATLAS adapts HMC step size and trajectory length for complex geometries.
problem Sampling complex geometries with constant step size HMC/NUTS.
method Adapts step size and trajectory length using local Hessian and no U-turn condition.
result ATLAS accurately samples complex geometries, outperforming NUTS.
We present an atlas of Legendrian knots in standard contact three-space. This gives a conjectural Legendrian classification for all knots with arc index at most 9, including alternating knots through 7 crossings and nonalternating knots through 9 crossings. Our method involves a computer search of grid diagrams and app…
X-CAL improves survival model calibration without sacrificing predictive power.
problem Improving the calibration of survival models to better match observed data.
method Explicit calibration (X-CAL) turns distributional calibration into a differentiable objective for survival modeling.
result X-CAL improves calibration metrics without significantly reducing predictive performance.
New method explains high-dimensional sphere data with latent factors.
problem Understanding intricate dependence structure in high-dimensional sphere data.
method Exploratory factor analysis of the projected normal distribution with a fast alternating expectation profile conditional maximization algorithm.
result Uniformly excellent results on various data types, including tweets, brain imaging, and cancer gene expression.
ATLAS separates invariant and transferable latent factors across diverse environments.
problem Transfer learning and robust prediction in heterogeneous environments.
method ATLAS leverages invariance principle to disentangle latent factors and uses auxiliary labels for robust prediction.
result Near-oracle performance and robust transferable prediction in new environments.
Busemann G-spaces with Finsler metrics
problem Admitting a differentiable DC atlas with a continuous Finsler metric
method Comparison geometry
result Generalizes previous work on G-spaces with Riemannian curvature bounds
We study Atlas-type models of equity markets with local characteristics that depend on both name and rank, and in ways that induce a stable capital distribution. Ergodic properties and rankings of processes are examined with reference to the theory of reflected Brownian motions in polyhedral domains. In the context of …
ATLAS uses LLMs to adaptively trade by optimizing prompts and coordinating agents.
problem Adapting LLMs for real-time financial decision-making in noisy markets.
method ATLAS integrates structured market data, uses Adaptive-OPRO for prompt optimization, and employs multi-agent coordination.
result Adaptive-OPRO consistently outperforms fixed prompts in financial trading.
New HDP-HMM model accurately segments Internet path delays.
problem Automating the statistical analysis of large-scale network delay measurements.
method Infinite Hidden Markov Model (HDP-HMM) for trace segmentation.
result The HDP-HMM model performs as well as human cognition in pattern recognition.
Paper finds essential regularity in singular connections.
problem Determining if singularities in connections are removable or essential.
method Introduces RT-equations and a procedure to lift connections to essential regularity.
result A computable procedure to lift connections to essential regularity.
New method improves Gaussian process regression on complex, sparse point clouds.
problem Traditional Gaussian processes struggle with restricted domains and point clouds.
method Atlas Gaussian Processes (RC-AGPs) combining heat kernel and RBF kernels.
result RC-AGPs outperform existing methods in regression accuracy.
In this paper, we introduce a new geometric description of the manifolds of matrices of fixed rank. The starting point is a geometric description of the Grassmann manifold Gr(Rk) of linear subspaces of dimension r<k in Rk which avoids the use of equivalence classes. The set $\mathbb{…
An Atlas model is a rank-based system of continuous semimartingales for which the steady-state values of the processes follow a power law, or Pareto distribution. For a power law, the log-log plot of these steady-state values versus rank is a straight line. Zipf's law is a power law for which the slope of this line is …
New coordinates show Toda flow is Morse-Smale.
problem Toda flow on full flags of Lie algebras.
method Introduced atlas and local coordinates.
result Toda flow on full flags is Morse-Smale.
We study a mean-field version of rank-based models of equity markets such as the Atlas model introduced by Fernholz in the framework of Stochastic Portfolio Theory. We obtain an asymptotic description of the market when the number of companies grows to infinity. Then, we discuss the long-term capital distribution. We r…
Here, we present the World Trade Atlas 1870-2013, a collection of annual world trade maps in which distance combines economic size and the different dimensions that affect international trade beyond mere geography. Trade distances, which are based on a gravity model predicting the existence of significant trade channel…
We prove that the underlying set of an orbifold equipped with the ring of smooth real-valued functions completely determines the orbifold atlas. Consequently, we obtain an essentially injective functor from orbifolds to differential spaces.
Atlas dataset categorizes clothing products with high accuracy.
problem Lack of real-world datasets for e-commerce clothing product categorization.
method Collected and labeled a dataset of 186,150 images, established a benchmark for image classification and sequence models.
result Benchmark model achieved a micro f-score of 0.92.
We generalize geometric prequantization of symplectic manifolds to differentiable stacks. Our approach is atlas-independent and provides a bijection between isomorphism classes of principal circle bundles (with or without connections) and second cohomology groups of certain chain complexes.
Robust RL with learned optimal adversary improves agent performance under adversarial state observations.
problem Ensuring reinforcement learning agents' robustness against adversarial perturbations of state observations.
method Proposed a framework of alternating training with learned adversaries (ATLA) to find optimal adversarial policies and enhance agent robustness.
result ATLA achieves state-of-the-art performance under strong adversaries in continuous control environments.
New method defines Gysin maps for stratified spaces, preserving signatures.
problem Defining and preserving signatures in stratified spaces.
method Smooth atlas stratified spaces, fiber bundles, Gysin maps, KK-theory.
result Gysin maps preserve analytic signature classes of Witt spaces.
An (flat) affine 3-manifold is a 3-manifold with an atlas of charts to an affine space R3 with transition maps in the affine transformation group Aff(R3). Equivalently an affine 3-manifold is a 3-manifold with a flat torsion-free affine connection. We show that a closed affine 3-mani…
Paper presents a brain tumor segmentation method using NGMM and 3D FVF.
problem Automatic brain tumor segmentation from MRIs is challenging.
method Normalized Gaussian Bayesian classifier and 3D Fluid Vector Flow algorithm.
result The method successfully segments brain tumors from MRI images.
The paper conjectures Khovanov homology can distinguish torus and twist knots.
problem Detecting and distinguishing knots using Khovanov homology.
method Examining all prime knots with up to 20 crossings, conjecturing Legendrian simplicity.
result Numerical evidence supports Khovanov homology distinguishing torus and twist knots.
A graph-based method detects abnormal brain connections in functional MRI data.
problem Detecting abnormal brain connections in functional MRI data.
method High-order Graph Auto-Encoder (GAE) with hypersphere distribution for functional data analysis.
result Identifies correlations between affected brain regions and their simultaneous occurrence over time.
DBGDGM models dynamic brain graphs for better understanding brain function.
problem Previous brain graph models ignore temporal dynamics, limiting their usefulness.
method DBGDGM clusters brain regions into evolving communities and learns dynamic node embeddings.
result DBGDGM outperforms baselines in graph generation, dynamic link prediction, and graph classification.
Deep learning models brain deformations based on atrophy and growth data.
problem Simulating brain deformations due to atrophy and growth.
method Differentiable biomechanical model using deep learning.
result Trained model can rapidly simulate new brain deformations with minimal residuals.
Brain decoding is a popular multivariate approach for hypothesis testing in neuroimaging. It is well known that the brain maps derived from weights of linear classifiers are hard to interpret because of high correlations between predictors, low signal to noise ratios, and the high dimensionality of neuroimaging data. T…
Extracts causal brain dynamics across multiple scales.
problem Statistical associations do not reflect causal mechanisms in brain dynamics.
method Multiscale causal backbone (MCB) extraction using advanced causal structure learning.
result Sparse MCBs reveal distinct causal roles at different brain frequency bands.
A new kernel measures brain network similarities, improving disease classification.
problem Lack of edge weight information in existing graph kernels for brain connectivity networks.
method Ordinal pattern kernel for weighted brain connectivity networks.
result The ordinal pattern kernel achieves better classification performance than state-of-the-art graph kernels.
Good atlases are defined for effective orbifolds, and a spark complex is constructed on each good atlas. It is proved that this process is 2-functorial with compatible systems playing as morphisms between good atlases, and that the spark character 2-functor factors through this 2-functor.