arXiv research

Proves Khovanov homology has no torsion for bipartite circle graphs.

Circle graph complexes reveal link properties via Khovanov homology.

We establish a correspondence between the dimer model on a bipartite graph and a circle pattern with the combinatorics of that graph, which holds for graphs that are either planar or embedded on the torus. The set of positive face weights on the graph gives a set of global coordinates on the space of circle patterns wi…

New research finds six bipartite intrinsically knotted graphs with 23 edges.

It was proven by González-Meneses, Manchón and Silvero that the extreme Khovanov homology of a link diagram is isomorphic to the reduced (co)homology of the independence simplicial complex obtained from a bipartite circle graph constructed from the diagram. In this paper we conjecture that this simplicial complex is al…

Bipartite graphs have been used to represent data relationships in many data-mining applications such as in E-commerce recommendation systems. Since learning in graph space is more complicated than in Euclidian space, recent studies have extensively utilized neural nets to effectively and efficiently embed a graph's no…

Improved text summarization using belief propagation on weighted bipartite graphs.

A graph is intrinsically knotted if every embedding contains a knotted cycle. It is known that intrinsically knotted graphs have at least 21 edges and that the KS graphs, $K_7$ and the 13 graphs obtained from $K_7$ by $\nabla Y$ moves, are the only minor minimal intrinsically knotted graphs with 21 edges. This set incl…

We define integral odd Khovanov homology of principally unimodular bipartite graph-links.

We present evidence in support of a conjecture that a bipartite graph with at least five vertices in each part and |E(G)| \geq 4 |V(G)| - 17 is intrinsically knotted. We prove the conjecture for graphs that have exactly five or exactly six vertices in one part. We also show that there is a constant C_n such that a bipa…

We characterize which automorphisms of an arbitrary complete bipartite graph $K_{n,m}$ can be induced by a homeomorphism of some embedding of the graph in $S^3$.

Incorrect parity-based descriptions of realizable Gauss diagrams found, but bipartite graphs provide a valid approach.

The symmetries of complex molecular structures can be modeled by the {\em topological symmetry group} of the underlying embedded graph. It is therefore important to understand which topological symmetry groups can be realized by particular abstract graphs. This question has been answered for complete graphs; it is natu…

We present a simple combinatorial model for quasipositive surfaces and positive braids, based on embedded bipartite graphs. As a first application, we extend the well-known duality on standard diagrams of torus links to twisted torus links. We then introduce a combinatorial notion of adjacency for bipartite graph links…

We study the Thurston-Bennequin number of complete and complete bipartite Legendrian graphs. We define a new invariant called the total Thurston-Bennequin number of the graph. We show that this invariant is determined by the Thurston-Bennequin numbers of 3-cycles for complete graphs and by the Thurston-Bennequin number…

Improved bipartite link prediction using 2-hop paths.

New tests detect communities in dense bipartite graphs with high accuracy.

We generalize the construction of the Heegaard Floer homology for a singular knot to that for a balanced bipartite graph. For a given graph, we provide a combinatorial description of the Euler characteristic of its Heegaard Floer homology by using the "Kauffman states" on a graph diagram.

The study proves conjecture for specific Artin groups.

We give an algorithmic computation for the height of Kauffman's clock lattice obtained from a knot diagram with two adjacent regions starred and without crossing information specified. We show that this lattice is more familiarly the graph of perfect matchings of a bipartite graph obtained from the knot diagram by over…

Temperley-Lieb algebras have been generalized to sl(3) web spaces. Since a cubic bipartite planar graph with suitable directions on edges is a web, the quantum sl(3) invariants naturally extend to all cubic bipartite planar graphs. First we completely classify them as a connected sum of primes webs. We also provide a m…

Graph matching consists of aligning the vertices of two unlabeled graphs in order to maximize the shared structure across networks; when the graphs are unipartite, this is commonly formulated as minimizing their edge disagreements. In this paper, we address the common setting in which one of the graphs to match is a bi…

The interior polynomial is an invariant of bipartite graphs, and a part of the HOMFLY polynomial of a special alternating link coincides with the interior polynomial of the Seifert graph of the link. We extend the interior polynomial to signed bipartite graphs, and we show that, in the planar case, it is equal to a par…

The interior polynomial is an invariant of (signed) bipartite graphs, and the interior polynomial of a plane bipartite graph is equal to a part of the HOMFLY polynomial of a naturally associated link. The HOMFLY polynomial $P_L(v,z)$ is a famous link invariant with many known properties. For example, the HOMFLY polynom…

Improved model for grouping nodes in bipartite networks.

Neural execution solves complex graph problems like bipartite matching.

We determine for which $n$, the complete bipartite graph $K_{n,n}$ has an embedding in $S^3$ whose topological symmetry group is isomorphic to one of the polyhedral groups: $A_4$, $A_5$, or $S_4$.

Quantum model for knotted graphs from knot theory.

Graph neural networks speed up nonnegative matrix factorization.

We present a discrete Morse-theoretic method for proving that a regular CW complex is homeomorphic to a sphere. We use this method to define bisimplices, the cells of a class of regular CW complexes we call bisimplicial complexes. The 1-skeleta of bisimplices are complete bipartite graphs making them suitable in constr…

PAC learning simplified as bipartite matching.

Paper uses bipartite graph to forecast cross-market returns, revealing asymmetry.

New method embeds bipartite graphs into vectors, overcoming nonlinear challenges.

The graph braid group of a complete bipartite graph is the fundamental group of a configuration space of points on the graph, which is a CAT(0) cube complex. We combine an analysis of the topology of links of vertices in this complex, the description of a hidden symmetry among the parameters, and known results from the…

Formula for $\mathfrak{sl}_2$ weight system on complete bipartite graphs.

We study the Seifert surfaces of a link by relating the embeddings of graphs by using induced graphs. As applications, we prove that every link $L$ is the boundary of an oriented surface which is obtained from a graph embedding of a complete bipartite graph $K_{2,n}$, where all voltage assignments on the edges of $K_{2…

Let G be a connected bipartite graph with color classes E and V and root polytope Q. Regarding the hypergraph (V,E) induced by G, we prove that its interior polynomial is equivalent to the Ehrhart polynomial of Q, which in turn is equivalent to the h-vector of any triangulation of Q. It follows that the interior polyno…

This paper improves upper bounds on ribbonlength for certain alternating links.

We consider matrix completion for recommender systems from the point of view of link prediction on graphs. Interaction data such as movie ratings can be represented by a bipartite user-item graph with labeled edges denoting observed ratings. Building on recent progress in deep learning on graph-structured data, we prop…

New model for detecting communities in weighted bipartite networks.

Typical graph embeddings may not capture type-specific bipartite graph features that arise in such areas as recommender systems, data visualization, and drug discovery. Machine learning methods utilized in these applications would be better served with specialized embedding techniques. We propose two embeddings for bip…

Planar decomposition simplifies HOMFLY polynomial calculation for certain knots and links.

A strong interaction is known to exist between edge-colored graphs (which encode PL pseudo-manifolds of arbitrary dimension) and random tensor models (as a possible approach to the study of Quantum Gravity). The key tool is the {\it G-degree} of the involved graphs, which drives the {\it $1/N$ expansion} in the tensor …

In this work an iterative algorithm based on unsupervised learning is presented, specifically on a Restricted Boltzmann Machine (RBM) to solve a perfect matching problem on a bipartite weighted graph. Iteratively is calculated the weights $w_{ij}$ and the bias parameters $θ= ( a_i, b_j)$ that maximize the energy funct…

Circle graph automorphisms match circle's and are strongly universal.

A biclustering algorithm finds dense disjoint subgraphs in weighted bipartite graphs.

The objectives of this article are three-fold. Firstly, we present for the first time explicit constructions of an infinite family of \textit{unbalanced} Ramanujan bigraphs. Secondly, we revisit some of the known methods for constructing Ramanujan graphs and discuss the computational work required in actually implement…

The paper calculates a specific weight system for chord diagrams with a particular graph structure.