Researchers use shape analysis to recover protein structures from Cryo-EM data.
problem Recovering the three-dimensional backbone structure of single polypeptide proteins from noisy tomographic projections.
method Shape analysis and matrix Lie group actions to deform point clouds to match 2D tomography data.
result Optimal deformations are computed to recover the three-dimensional backbone structure of proteins.
Given the superposition of a low-rank matrix plus the product of a known fat compression matrix times a sparse matrix, the goal of this paper is to establish deterministic conditions under which exact recovery of the low-rank and sparse components becomes possible. This fundamental identifiability issue arises with tra…
Gating is a key feature in modern neural networks including LSTMs, GRUs and sparsely-gated deep neural networks. The backbone of such gated networks is a mixture-of-experts layer, where several experts make regression decisions and gating controls how to weigh the decisions in an input-dependent manner. Despite having …
We detect the backbone of the weighted bipartite network of the Japanese credit market relationships. The backbone is detected by adapting a general method used in the investigation of weighted networks. With this approach we detect a backbone that is statistically validated against a null hypothesis of uniform diversi…
A new method scales sparse machine learning to ultra-high dimensional problems.
problem Sparse and interpretable machine learning in ultra-high dimensional data.
method Two-phase approach: backbone set determination followed by reduced problem solving.
result The backbone set contains truly relevant features with high probability.
Deep forecasting models show output heads significantly improve performance on fat-tailed financial returns.
problem Improving deep learning models for forecasting fat-tailed financial returns.
method Comparison of backbone architectures and output heads (point, Gaussian, Gaussian mixture) on S&P 500 monthly log-returns.
result Switching from point to Gaussian heads improves CRPS by about 1.3 percent, and from Gaussian to mixture adds another 2.4 percent.
A new diffusion model generates novel protein backbones without relying on pretrained networks.
problem Generating novel protein backbones without relying on pretrained networks.
method Developed a SE(3) invariant diffusion model on multiple frames, called FrameDiff.
result Generated designable protein monomers up to 500 amino acids without pretrained networks.
In this paper, we investigate the statistical features of the weighted international-trade network. By finding the maximum weight spanning trees for this network we make the extraction of the truly relevant connections forming the network's backbone. We discuss the role of large-sized countries (strongest economies) in…
Generative model designs highly designable proteins using geometric algebra.
problem Creating proteins with diverse and statistically accurate secondary structures.
method Introduced a geometric algebra flow matching model (FrameFlow) with Clifford Frame Attention (CFA) for protein backbone design.
result Achieved high designability, diversity, and novelty in protein backbone sampling.
Attention networks show promise for both vision and language tasks, by emphasizing relationships between constituent elements through weighting functions. Such elements could be regions in an image output by a region proposal network, or words in a sentence, represented by word embedding. Thus far the learning of atten…
A new method improves posterior approximation for complex distributions.
problem Difficulty in capturing multimodal and heavy-tailed posteriors with standard normalizing flows.
method StiCTAF: stick-breaking mixture base with component-wise tail adaptation.
result Improved tail recovery and better mode coverage compared to benchmarks.
Correlation Networks (CNs) inherently suffer from redundant information in their network topology. Bayesian Networks (BNs), on the other hand, include only non-redundant information (from a probabilistic perspective) resulting in a sparse topology from which generalizable physical features can be extracted. We advocate…
New approach uses contrastive learning for better wireless power control.
problem Improving power control in wireless networks.
method A multi-layer perceptron with a contrastive learning backbone and head.
result Significant gains in sum-throughput and sample efficiency over supervised learning.
RPN 2 improves function learning by modeling data interdependence.
problem Invalid assumption of input data independence leads to performance degradation.
method Integrates data and structural interdependence functions into RPN 2's architecture.
result Significantly improves learning performance and expands unifying potential.
New method learns diverse protein scaffolds for motif design.
problem Designing long, diverse protein scaffolds for specific motifs.
method E(3)-equivariant graph neural network for diffusion modeling.
result First to guarantee conditional sampling from diffusion models.
MTL-NAS combines NAS with GP-MTL for task-agnostic multi-task learning.
problem Designing architectures for diverse tasks with varying priors.
method Disentangled GP-MTL networks, hierarchical feature sharing, and gradient-based search.
result General-purpose model trained once can adapt to multiple tasks.
Few-step protein backbone generators reduce sampling time by over 20x.
problem Computational bottleneck in diffusion-based protein generation models.
method Score distillation adapted for protein backbone generation, combined with inference time noise modulation.
result Significant reduction in sampling time (20+ fold) while maintaining comparable performance.
A TTA framework improves forecasting accuracy in non-stationary time series.
problem Improving forecasting accuracy in non-stationary time series.
method Normalization-based test-time adaptation for causal timeseries forecasting and direction classification.
result Normalization-based TTA improves forecasting error in synthetic gradual drift and can even hurt in aggressive norm-only adaptation in financial markets.
V-HMN integrates memory mechanisms for improved image recognition.
problem Limited interpretability and high data requirements of existing vision backbones.
method Brain-inspired hierarchical memory modules with iterative refinement.
result V-HMN achieves strong performance on image classification benchmarks.
Proteins are the major building blocks of life, and actuators of almost all chemical and biophysical events in living organisms. Their native structures in turn enable their biological functions which have a fundamental role in drug design. This motivates predicting the structure of a protein from its sequence of amino…
Paper tackles fairness issues in GNNs by proposing ELEGANT for certification.
problem Fairness issues in GNN predictions due to graph data perturbations.
method Proposes ELEGANT framework for certifying fairness of any GNN without assumptions or re-training.
result The fairness of any GNN backbone is impossible to be corrupted under certain perturbation budgets.
An analysis of the Japanese credit market in 2004 between banks and quoted firms is done in this paper using the tools of the networks theory. It can be pointed out that: (i) a backbone of the credit channel emerges, where some links play a crucial role; (ii) big banks privilege long-term contracts; the "minimal spanni…
SPIRE enables efficient federated learning for diffusion models by separating client-specific embeddings from a shared backbone.
problem Large diffusion models are impractical for federated learning due to their size.
method SPIRE separates the network into a global backbone and client-specific embeddings, enabling efficient finetuning.
result SPIRE achieves parameter-efficient finetuning, updating only a small fraction of weights.
BackboneLearn speeds up MIO-based machine learning problems.
problem Scaling mixed-integer optimization problems in machine learning.
method An open-source Python framework for MIO problems with indicator variables.
result Solves MIO problems faster and more accurately than existing methods.
Structural and topological information play a key role in modeling flow and transport through fractured rock in the subsurface. Discrete fracture network (DFN) computational suites such as dfnWorks are designed to simulate flow and transport in such porous media. Flow and transport calculations reveal that a small back…
The backbone of most proteins forms an open curve. To study their entanglement, a common strategy consists in searching for the presence of knots in their backbones using topological invariants. However, this approach requires to close the curve into a loop, which alters the geometry of curve. Knoto-ID allows evaluatin…
Given a limited number of entries from the superposition of a low-rank matrix plus the product of a known fat compression matrix times a sparse matrix, recovery of the low-rank and sparse components is a fundamental task subsuming compressed sensing, matrix completion, and principal components pursuit. This paper devel…
A chord diagram consists of a circle, called the backbone, with line segments, called chords, whose endpoints are attached to distinct points on the circle. The genus of a chord diagram is the genus of the orientable surface obtained by thickening the backbone to an annulus and attaching bands to the inner boundary cir…
Reinforcement Patching optimizes dynamic sequence patching for efficient time series forecasting.
problem Efficiently learning data-adaptive representations for long-horizon sequence data, especially continuous sequences.
method Reinforcement Patching (ReinPatch) uses reinforcement learning to optimize dynamic patching policies and sequence backbones.
result ReinPatch achieves compelling performance in time-series forecasting compared to state-of-the-art methods.
We derive an arbitrage free relationship between recovery swap rates, digital default swap spreads and conventional CDS spreads, and argue that the fair forward recovery rate used in recovery swaps must contain a convexity premium over the expected recovery value.
BiTAT improves neural network quantization for edge devices by focusing on weight dependencies and disentangling them.
problem Performance degradation of compact neural networks under extreme quantization.
method Task-dependent Aggregated Transformation (BiTAT) method that orthonormalizes weights and progressively quantizes them.
result BiTAT effectively preserves model performance on ImageNet and CIFAR-100 with compact backbones.
Method uses Seq2Seq learning to automatically generate recovery commands for ICT systems.
problem Manual decision-making for recovery commands is time-consuming and error-prone.
method Seq2Seq neural network model trained on past logs and commands.
result The model can estimate accurate recovery commands from new failures.
A new model explains U- and Swoosh-shaped stock price recovery during the COVID-19.
problem Modeling stock price recovery during the COVID-19 with V- and L-shaped recovery.
method Introducing a sentiment variable θ to quantify investor sentiment and simulate U- and Swoosh-shaped recovery. result The model explains U- and Swoosh-shaped recovery of sectoral indices with positive sentiment.
This paper improves support recovery in universal one-bit compressed sensing.
problem Support recovery in one-bit compressed sensing for sparse signals.
method Proposes approximate support recovery and superset recovery algorithms with polynomial-time complexity.
result Achieves improved support recovery with fewer measurements compared to existing methods.
This work provides a guaranteed tensor recovery method by combining low-rankness and smoothness priors.
problem Guaranteed tensor recovery with theoretical guarantees for low-rank and smoothness priors.
method Developed a new regularization term that combines low-rankness and smoothness priors, proving exact recovery guarantees.
result Rigorously proved exact recovery guarantees for tensor completion and tensor robust principal component analysis.
We discuss a general notion of "sparsity structure" and associated recoveries of a sparse signal from its linear image of reduced dimension possibly corrupted with noise. Our approach allows for unified treatment of (a) the "usual sparsity" and "usual ℓ1 recovery," (b) block-sparsity with possibly overlapping blo…
We consider the problem of signal recovery on graphs as graphs model data with complex structure as signals on a graph. Graph signal recovery implies recovery of one or multiple smooth graph signals from noisy, corrupted, or incomplete measurements. We propose a graph signal model and formulate signal recovery as a cor…
IRKSN algorithm achieves sparse recovery with wider applicability conditions.
problem Sparse recovery challenges due to NP-hard nature and restrictive conditions.
method IRKSN algorithm based on k-support norm regularizer. result Achieves sparse recovery with explicit constants and standard linear rate.
New method uses graph-based interpolation for few-shot classification.
problem Learning models with limited labeled examples.
method Graph-based feature vector interpolation for transductive learning.
result Significant gains in few-shot classification compared to other methods.
AugMask trains diffusion models on incomplete tabular data by augmenting missing values and applying denoising supervision.
problem Training diffusion models on incomplete tabular data with missing values.
method AugMask uses stochastic augmentation and denoising supervision to adapt diffusion models to incomplete data.
result AugMask enables diffusion-based tabular generators to outperform specialized missing-aware baselines across various datasets and missingness regimes.
Higher-order tensors can represent scores in a rating system, frames in a video, and images of the same subject. In practice, the measurements are often highly quantized due to the sampling strategies or the quality of devices. Existing works on tensor recovery have focused on data losses and random noises. Only a few …
GAPA method provides efficient uncertainty quantification for pretrained networks.
problem Reliable uncertainty estimates for pretrained models are challenging.
method Post-hoc Gaussian Process Activations (GAPA) method that shifts Bayesian modeling from weights to activations.
result GAPA method provides efficient uncertainty quantification without altering the backbone's predictions.
Study finds the cutoff for exact recovery in Gaussian mixture models.
problem Determining the separation of cluster centers for exact recovery in Gaussian mixture models.
method Used information theory and SDP relaxation of K-means clustering. result Sharp threshold for exact recovery of cluster labels without assuming cluster center symmetry.
LDA improves image classification accuracy with fewer features.
problem Fine-grained image classification with pretrained features.
method Supervised dimensionality reduction with LDA before linear probing.
result LDA improves accuracy over full features in 11 out of 12 configurations.
In recent years research on credit risk modelling has mainly focused on default probabilities. Recovery rates are usually modelled independently, quite often they are even assumed constant. Then, however, the structural connection between recovery rates and default probabilities is lost and the tails of the loss distri…
Study optimal portfolio selection with Recovery Average Value at Risk, showing better control over liabilities.
problem Optimizing portfolios with a new risk measure under known or uncertain distributions.
method Existence results for mean-risk optimal portfolios under different distributional assumptions.
result Portfolio selection under Recovery Average Value at Risk provides better control over liabilities.
The paper improves conditions for unique recovery in homomorphic sensing of subspaces.
problem Unique recovery of points in a linear subspace from their images under linear maps.
method Tighter and simpler conditions for unique recovery in single and subspace arrangement cases, extending to noise stability.
result Conditions for unique recovery in homomorphic sensing are improved and unified.
HSNLD solves robust Hankel recovery efficiently and robustly.
problem Robust Hankel recovery of sparse outliers and missing entries.
method Hankel Structured Newton-Like Descent (HSNLD) algorithm.
result HSNLD achieves linear convergence independent of the condition number.