We develop the Latent Multi-group Membership Graph (LMMG) model, a model of networks with rich node feature structure. In the LMMG model, each node belongs to multiple groups and each latent group models the occurrence of links as well as the node feature structure. The LMMG can be used to summarize the network structu…
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48 results for “Node Feature Prediction”
A Graph Feature Auto-Encoder for the Prediction of Unobserved Node Features on Biological Networksq-bio.QM
Graph auto-encoder predicts unobserved node features from biological networks and omics data.
problem Integrating biological networks and continuous node features for better prediction.
method Graph neural networks and feature auto-encoders trained on feature reconstruction.
result Graph feature auto-encoder outperforms auto-encoders trained on graph reconstruction for predicting unobserved node features.
We consider the two problems of predicting links in a dynamic graph sequence and predicting functions defined at each node of the graph. In many applications, the solution of one problem is useful for solving the other. Indeed, if these functions reflect node features, then they are related through the graph structure.…
CatGCN improves GCNs by modeling feature interactions for categorical node features.
problem Suboptimal initial node representations in GCNs due to lack of feature interaction modeling.
method Integrates explicit interaction modeling (local and global) into initial node representation learning for categorical node features.
result CatGCN enhances initial node representations through feature interaction modeling, leading to improved model performance.
New edge features improve GNN performance in biological datasets.
problem Inefficient use of edge features in GNNs.
method Self-supervised and unsupervised learning for new edge features, incorporating Forman-Ricci curvature.
result Improved node classification performance over baseline GNN models.
In many graphs such as social networks, nodes have associated attributes representing their behavior. Predicting node attributes in such graphs is an important problem with applications in many domains like recommendation systems, privacy preservation, and targeted advertisement. Attributes values can be predicted by a…
Simplifies GNN models by selecting important features for node classification.
problem Challenges in analyzing and selecting important features in GNN models.
method Decoupling feature aggregation and depth, using softmax and L2-normalization.
result FSGNN achieves comparable or higher accuracy than state-of-the-art GNN models.
Prediction tasks over nodes and edges in networks require careful effort in engineering features used by learning algorithms. Recent research in the broader field of representation learning has led to significant progress in automating prediction by learning the features themselves. However, present feature learning ap…
PathBoost boosts graph-level predictions using path-based features.
problem Graph-level classification and regression challenges.
method Gradient tree boosting method for graph-level prediction.
result PathBoost outperforms graph neural networks and graph kernel approaches in many cases.
Graph Posterior Network improves uncertainty estimation for node classification in interdependent graphs.
problem Uncertainty quantification for non-independent node-level predictions in graphs.
method Derives axioms for expected predictive uncertainty, proposes Graph Posterior Network (GPN) which performs Bayesian posterior updates.
result GPN outperforms existing approaches for uncertainty estimation in semi-supervised node classification.
Recently, graph neural networks (GNNs) have proved to be suitable in tasks on unstructured data. Particularly in tasks as community detection, node classification, and link prediction. However, most GNN models still operate with static relationships. We propose the Graph Learning Network (GLN), a simple yet effective p…
Link prediction requires predicting which new links are likely to appear in a graph. Being able to predict unseen links with good accuracy has important applications in several domains such as social media, security, transportation, and recommendation systems. A common approach is to use features based on the common ne…
MR-GNN: Multi-Resolution and Dual Graph Neural Network for Predicting Structured Entity Interactionscs.LG
Predicting interactions between structured entities lies at the core of numerous tasks such as drug regimen and new material design. In recent years, graph neural networks have become attractive. They represent structured entities as graphs and then extract features from each individual graph using graph convolution op…
Improved graph neural networks by separating feature aggregation and depth.
problem Understanding feature importance in graph neural networks without prior information.
method Decoupling feature aggregation and depth, using softmax as a regularizer, and introducing 'Soft-Selector' and 'Hop-Normalization'.
result FSGNN model achieves up to 64% accuracy improvements in node classification tasks.
GOAT learns multiple node representations from graph structure alone.
problem Context-free graph representation learning limits model performance.
method Inspired by gossip and mutual attention, GOAT learns multiple node representations.
result GOAT outperforms 12 SOTA baselines on link prediction and clustering tasks.
GRAPE uses graph representation to handle missing data in feature imputation and label prediction.
problem Handling missing data in machine learning tasks.
method GRAPE uses a bipartite graph where observations and features are nodes, and observed feature values are edges. It formulates feature imputation as edge-level prediction and label prediction as node-level prediction, solving these with Graph Neural Networks.
result GRAPE achieves 20% lower mean absolute error for imputation and 10% lower for label prediction compared to state-of-the-art methods.
TGAT learns node embeddings for evolving graphs, capturing both static and temporal features.
problem Learning node embeddings for dynamic graphs with evolving topological structures and temporal patterns.
method Temporal Graph Attention (TGAT) layer using self-attention and functional time encoding.
result TGAT model can inductively infer node embeddings for new and observed nodes as the graph evolves.
AGE improves graph embedding by smoothing features and iteratively enhancing node embeddings.
problem Challenges in attributed graph embedding, especially in preserving optimal low-pass characteristics and robustness.
method AGE, a novel framework combining Laplacian smoothing and adaptive encoding, addresses these issues.
result AGE consistently outperforms state-of-the-art methods on node clustering and link prediction tasks.
Graph Neural Networks (GNNs) for prediction tasks like node classification or edge prediction have received increasing attention in recent machine learning from graphically structured data. However, a large quantity of labeled graphs is difficult to obtain, which significantly limits the true success of GNNs. Although …
Learning node embeddings that capture a node's position within the broader graph structure is crucial for many prediction tasks on graphs. However, existing Graph Neural Network (GNN) architectures have limited power in capturing the position/location of a given node with respect to all other nodes of the graph. Here w…
Graph Neural Networks (GNNs) are a powerful tool for machine learning on graphs.GNNs combine node feature information with the graph structure by recursively passing neural messages along edges of the input graph. However, incorporating both graph structure and feature information leads to complex models, and explainin…
We examine two fundamental tasks associated with graph representation learning: link prediction and semi-supervised node classification. We present a novel autoencoder architecture capable of learning a joint representation of both local graph structure and available node features for the multi-task learning of link pr…
CopulaGNN integrates graph representational and correlational roles for better node-level predictions.
problem Graphs encode diverse roles in node-level prediction tasks, but GNNs struggle with correlational information.
method Copula theory to describe multivariate dependence, integrating representational and correlational graph information.
result CopulaGNN improves GNN performance on regression tasks by leveraging both types of graph information.
PHLP uses persistent homology to interpret graph link prediction.
problem Interpreting why graph neural network models perform well in link prediction.
method Employing persistent homology to analyze graph topology and extract features.
result PHLP outperforms state-of-the-art models on most benchmark datasets.
Low-dimensional embeddings of nodes in large graphs have proved extremely useful in a variety of prediction tasks, from content recommendation to identifying protein functions. However, most existing approaches require that all nodes in the graph are present during training of the embeddings; these previous approaches …
New graph foundation models respect symmetries for broader applicability.
problem Tailored graph machine learning architectures limit broader applicability.
method Investigates symmetries for label and feature permutations, proving network universal approximator.
result Universal approximator on multisets respecting node and feature permutations.
Augments graph node features to improve GNN performance.
problem Improving graph neural networks' performance on large-scale datasets.
method Iteratively augments node features with gradient-based adversarial perturbations.
result Boosts model performance in node classification, link prediction, and graph classification tasks.
GCN adapted for graphs with missing features, improving performance.
problem GCN struggles with graphs containing missing features.
method Integrates missing feature processing within GCN architecture using Gaussian Mixture Model.
result Significantly outperforms imputation-based methods in node classification and link prediction.
Graphs (networks) are ubiquitous and allow us to model entities (nodes) and the dependencies (edges) between them. Learning a useful feature representation from graph data lies at the heart and success of many machine learning tasks such as classification, anomaly detection, link prediction, among many others. Many exi…
Network representation learning (NRL) is a powerful technique for learning low-dimensional vector representation of high-dimensional and sparse graphs. Most studies explore the structure and metadata associated with the graph using random walks and employ an unsupervised or semi-supervised learning schemes. Learning in…
The main approaches for node classification in graphs are information propagation and the association of the class of the node with external information. State of the art methods merge these approaches through Graph Convolutional Networks. We here use the association of topological features of the nodes with their clas…
In this paper, we tackle the real-world problem of predicting Yelp star-review rating based on business features (such as images, descriptions), user features (average previous ratings), and, of particular interest, network properties (which businesses has a user rated before). We compare multiple models on different s…
We present a probabilistic framework for overlapping community discovery and link prediction for relational data, given as a graph. The proposed framework has: (1) a deep architecture which enables us to infer multiple layers of latent features/communities for each node, providing superior link prediction performance o…
PanRep learns universal node embeddings for heterogeneous graphs.
problem Learning universal node embeddings for heterogeneous graphs.
method Graph Neural Network (GNN) model with four decoders capturing different properties.
result PanRep outperforms unsupervised and supervised methods in node classification and link prediction.
Relational data representations have become an increasingly important topic due to the recent proliferation of network datasets (e.g., social, biological, information networks) and a corresponding increase in the application of statistical relational learning (SRL) algorithms to these domains. In this article, we exami…
Node embedding is the task of extracting informative and descriptive features over the nodes of a graph. The importance of node embeddings for graph analytics, as well as learning tasks such as node classification, link prediction and community detection, has led to increased interest on the problem leading to a number…
Distance Encoding: Design Provably More Powerful Neural Networks for Graph Representation Learningcs.LG
DE improves GNNs by distinguishing graph substructures, enhancing accuracy.
problem Limited expressive power of GNNs in representing graph substructures.
method Introduces Distance Encoding (DE) to assist GNNs in distinguishing graph substructures.
result DE distinguishes graph substructures that traditional GNNs cannot, improving accuracy.
CIT and CIF improve feature selection for downstream prediction.
problem Feature selection bias in machine learning models.
method Conditional inference trees and forests with Bonferroni correction.
result CIF ranks top 3 among 18 regression methods and top 4 among 17 classification methods.
Network embedding has proved extremely useful in a variety of network analysis tasks such as node classification, link prediction, and network visualization. Almost all the existing network embedding methods learn to map the node IDs to their corresponding node embeddings. This design principle, however, hinders the ex…
We propose a probabilistic framework for modelling and exploring the latent structure of relational data. Given feature information for the nodes in a network, the scalable deep generative relational model (SDREM) builds a deep network architecture that can approximate potential nonlinear mappings between nodes' featur…
FSD-CAP: Fractional Subgraph Diffusion with Class-Aware Propagation for Graph Feature Imputationcs.LG
FSD-CAP improves graph feature imputation under high missing rates.
problem Challenges in imputing missing node features in graphs, especially under high missing rates.
method Two-stage framework: subgraph expansion, fractional diffusion, class-aware propagation.
result Significantly improved imputation quality compared to existing methods, achieving high accuracy on benchmark datasets.
In colored graphs, node classes are often associated with either their neighbors class or with information not incorporated in the graph associated with each node. We here propose that node classes are also associated with topological features of the nodes. We use this association to improve Graph machine learning in g…
Networks are ubiquitous structure that describes complex relationships between different entities in the real world. As a critical component of prediction task over nodes in networks, learning the feature representation of nodes has become one of the most active areas recently. Network Embedding, aiming to learn non-li…
Many researchers both in academia and industry have long been interested in the stock market. Numerous approaches were developed to accurately predict future trends in stock prices. Recently, there has been a growing interest in utilizing graph-structured data in computer science research communities. Methods that use …
Recently, link prediction has attracted more attentions from various disciplines such as computer science, bioinformatics and economics. In this problem, unknown links between nodes are discovered based on numerous information such as network topology, profile information and user generated contents. Most of the previo…
The paper examines node2vec embeddings for community detection in networks.
problem Theoretical understanding of node2vec embeddings for community detection.
method Analysis of node2vec embeddings for community recovery in stochastic block models.
result k-means clustering on node2vec embeddings gives weakly consistent community recovery for stochastic block models.
Eigen-GNN enhances GNNs by preserving graph structures.
problem Existing shallow GNNs fail to effectively preserve graph structures.
method Integrates eigenspace of graph structures into GNNs as a dimensionality reduction module.
result Eigen-GNN boosts GNNs' ability to preserve graph structures without increasing depth.
Graphs are widely used as a natural framework that captures interactions between individual elements represented as nodes in a graph. In medical applications, specifically, nodes can represent individuals within a potentially large population (patients or healthy controls) accompanied by a set of features, while the gr…