A locally-built, LLM-digested index of recent arXiv papers in quant finance, geometry/topology, and statistical ML — keyword search served straight from SQLite on this machine.
Neural nets predict user attention from mouse movements.
Automated model tracks mouse behavior in home cages.
New ensemble models classify mouse movement trajectories to assess survey question difficulty.
This research uses Siamese networks to identify partial mouse brain images from the Allen atlas.
Deep learning predicts stress levels from mouse hippocampus activity.
Mouse dynamics is a potential means of authenticating users. Typically, the authentication process is based on classical machine learning techniques, but recently, deep learning techniques have been introduced for this purpose. Although prior research has demonstrated how machine learning and deep learning algorithms c…
Feature selection predicts immune state changes in RA mouse model.
Machine learning detects survey validity from user behavior.
Deep learning models outperform classical methods in forecasting neural activity.
Gaussian graphical models are widely used to represent conditional dependence among random variables. In this paper, we propose a novel estimator for data arising from a group of Gaussian graphical models that are themselves dependent. A motivating example is that of modeling gene expression collected on multiple tissu…
We propose a multimodal approach for detection of students' behavioral engagement states (i.e., On-Task vs. Off-Task), based on three unobtrusive modalities: Appearance, Context-Performance, and Mouse. Final behavioral engagement states are achieved by fusing modality-specific classifiers at the decision level. Various…
TNDE quantifies dynamic gene drivers from single-cell snapshots.
We propose a general modeling and inference framework that composes probabilistic graphical models with deep learning methods and combines their respective strengths. Our model family augments graphical structure in latent variables with neural network observation models. For inference, we extend variational autoencode…
Identification of patterns from discrete data time-series for statistical inference, threat detection, social opinion dynamics, brain activity prediction has received recent momentum. In addition to the huge data size, the associated challenges are, for example, (i) missing data to construct a closed time-varying compl…
Although we have tons of machine learning tools to analyze data, most of them require users have some programming backgrounds. Here we introduce a SaaS application which allows users analyze their data without any coding and even without any knowledge of machine learning. Users can upload, train, predict and download t…
Many real-valued stochastic time-series are locally linear (Gassian), but globally non-linear. For example, the trajectory of a human hand gesture can be viewed as a linear dynamic system driven by a nonlinear dynamic system that represents muscle actions. We present a mixed-state dynamic graphical model in which a hid…
Decodes neural activity to detect context effects in natural settings.
While label fusion from multiple noisy annotations is a well understood concept in data wrangling (tackled for example by the Dawid-Skene (DS) model), we consider the extended problem of carrying out learning when the labels themselves are not consistently annotated with the same schema. We show that even if annotators…
The interplay between inter-neuronal network topology and cognition has been studied deeply by connectomics researchers and network scientists, which is crucial towards understanding the remarkable efficacy of biological neural networks. Curiously, the deep learning revolution that revived neural networks has not paid …
ChronoMID builds on the success of cross-modal convolutional neural networks (X-CNNs), making the novel application of the technique to medical imaging data. Specifically, this paper presents and compares alternative approaches - timestamps and difference images - to incorporate temporal information for the classificat…
Boolean matrix factorisation aims to decompose a binary data matrix into an approximate Boolean product of two low rank, binary matrices: one containing meaningful patterns, the other quantifying how the observations can be expressed as a combination of these patterns. We introduce the OrMachine, a probabilistic genera…
Paper analyzes adversarial attacks and defenses using game theory.
New model detects communities in networks with signed, continuous weights.
State-of-the-art deep neural networks (DNNs) are highly effective in solving many complex real-world problems. However, these models are vulnerable to adversarial perturbation attacks, and despite the plethora of research in this domain, to this day, adversaries still have the upper hand in the cat and mouse game of ad…
Classical models describe primary visual cortex (V1) as a filter bank of orientation-selective linear-nonlinear (LN) or energy models, but these models fail to predict neural responses to natural stimuli accurately. Recent work shows that models based on convolutional neural networks (CNNs) lead to much more accurate p…
Develops probabilistic models for gene regulatory network inference.
Clustering high-dimensional data, such as images or biological measurements, is a long-standingproblem and has been studied extensively. Recently, Deep Clustering has gained popularity due toits flexibility in fitting the specific peculiarities of complex data. Here we introduce the Mixture-of-Experts Similarity Variat…
Neuroscientists classify neurons into different types that perform similar computations at different locations in the visual field. Traditional methods for neural system identification do not capitalize on this separation of 'what' and 'where'. Learning deep convolutional feature spaces that are shared among many neuro…
Understanding if classifiers generalize to out-of-sample datasets is a central problem in machine learning. Microscopy images provide a standardized way to measure the generalization capacity of image classifiers, as we can image the same classes of objects under increasingly divergent, but controlled factors of variat…
Bayesian method learns graph structures from Gaussian data efficiently.
Dreamer 4 learns Minecraft tasks from videos alone.
Extracting an understanding of the underlying system from high dimensional data is a growing problem in science. Discovering informative and meaningful features is crucial for clustering, classification, and low dimensional data embedding. Here we propose to construct features based on their ability to discriminate bet…
ODBAE detects complex phenotypes in biological data.
We describe a procedure to deform cubulations of hyperbolic groups by "bending hyperplanes". Our construction is inspired by related constructions like Thurston's Mickey Mouse example, walls in fibred hyperbolic -manifolds and free-by- groups, and Hsu-Wise turns. As an application, we show that every coco…
Neural networks promise to bring robust, quantitative analysis to medical fields, but adoption is limited by the technicalities of training these networks. To address this translation gap between medical researchers and neural networks in the field of pathology, we have created an intuitive interface which utilizes the…
Principal component regression (PCR) is a widely used two-stage procedure: principal component analysis (PCA), followed by regression in which the selected principal components are regarded as new explanatory variables in the model. Note that PCA is based only on the explanatory variables, so the principal components a…
Cellina uses supervised disentanglement to predict cell behavior in tissues.
New model uncovers non-Euclidean neural representations.
Developed a multiway classification method for sparse data.
Evaluating, explaining, and visualizing high-level concepts in generative models, such as variational autoencoders (VAEs), is challenging in part due to a lack of known prediction classes that are required to generate saliency maps in supervised learning. While saliency maps may help identify relevant features (e.g., p…
Volumetric analysis of brain ventricle (BV) structure is a key tool in the study of central nervous system development in embryonic mice. High-frequency ultrasound (HFU) is the only non-invasive, real-time modality available for rapid volumetric imaging of embryos in utero. However, manual segmentation of the BV from H…
Quantifying behavior is crucial for many applications in neuroscience. Videography provides easy methods for the observation and recording of animal behavior in diverse settings, yet extracting particular aspects of a behavior for further analysis can be highly time consuming. In motor control studies, humans or other …
Sparse Convex Biclustering improves accuracy and robustness in high-dimensional datasets.
Active learning method for neural population dynamics using optogenetics.
Cataloging the neuronal cell types that comprise circuitry of individual brain regions is a major goal of modern neuroscience and the BRAIN initiative. Single-cell RNA sequencing can now be used to measure the gene expression profiles of individual neurons and to categorize neurons based on their gene expression profil…
Predicts student performance in interactive online question pools using GNNs.
Fluorescence microscopy has enabled a dramatic development in modern biology. Due to its inherently weak signal, fluorescence microscopy is not only much noisier than photography, but also presented with Poisson-Gaussian noise where Poisson noise, or shot noise, is the dominating noise source. To get clean fluorescence…
In statistical connectomics, the quantitative study of brain networks, estimating the mean of a population of graphs based on a sample is a core problem. Often, this problem is especially difficult because the sample or cohort size is relatively small, sometimes even a single subject. While using the element-wise sampl…