New method reconstructs missing variables in time series using autoencoders and automatic differentiation.
problem Reconstruct missing variables in time series with flexible input and output combinations.
method Train an autoencoder with all features, optimize missing variables as inputs, and use automatic differentiation.
result Flexible input and output combinations can be achieved without retraining the autoencoder.
Robust variable selection for high-dimensional data with missing and measurement errors.
problem Missing data and measurement errors confound data distribution.
method Exponential loss function with inverse probability weighting and additive error models.
result The Atan punishment method improves robust variable selection.
We present an automatic classification method for astronomical catalogs with missing data. We use Bayesian networks, a probabilistic graphical model, that allows us to perform inference to pre- dict missing values given observed data and dependency relationships between variables. To learn a Bayesian network from incom…
Extends model-x framework to handle missing data.
problem Inability to control false selections in missing data settings.
method Posterior sampled imputation, univariate imputation, joint imputation and sampling knockoffs.
result Preserves theoretical guarantees of model-x framework in missing data setting.
Develops a VAE model for datasets with missing data.
problem Applying VAEs to datasets with missing data.
method A novel latent variable model of a corruption process generating missing data, with a tractable ELBO.
result Improved marginal log-likelihood and better missing data imputation compared to existing approaches.
Proposes a method to combine datasets with missing values using Gaussian process latent variables.
problem Combining datasets with missing values under non-Missing at Random (NMAR) missingness.
method Gaussian process latent variable model for non-MAR missing data.
result Valid estimates are obtained using the proposed method, while existing methods provide severely biased estimates.
Latent variable models can be used to probabilistically "fill-in" missing data entries. The variational autoencoder architecture (Kingma and Welling, 2014; Rezende et al., 2014) includes a "recognition" or "encoder" network that infers the latent variables given the data variables. However, it is not clear how to handl…
Study tackles variable selection with missing covariates and outcomes using machine learning and imputation.
problem Missing data in both covariates and outcomes complicates variable selection in health studies.
method Exploits machine learning flexibility and bootstrap imputation for variable selection, comparing multiple methods.
result XGBoost and BART perform best in variable selection with bootstrap imputation, achieving high F1 scores and low Type I errors. We introduce the problem of reconstructing a sequence of multidimensional real vectors where some of the data are missing. This problem contains regression and mapping inversion as particular cases where the pattern of missing data is independent of the sequence index. The problem is hard because it involves possibly m…
Unified framework for variable selection in model-based clustering with missing data.
problem Challenges in identifying relevant variables and handling missing data in model-based clustering.
method Unified framework incorporating a data-driven penalty matrix and a mechanism for missingness modeling.
result Achieves both asymptotic consistency and selection consistency in the presence of missing data.
This paper tackles time series imputation by identifying and modeling different missing mechanisms.
problem Different types of missing mechanisms (MAR, MNAR) in time series data.
method Proposes a framework for time series imputation by analyzing data generation processes and modeling latent variables via variational inference and normalizing flow.
result Establishes identifiability results for latent variables under nonlinear independent component analysis, showing that latent variables are identifiable.
Proposes a deep latent variable model for MNAR data.
problem Missing data leading to biased results in MAR assumptions.
method Deep latent variable models with conditional no self-censoring.
result Establishes identifiability of MNAR data distribution.
Flexible variable selection handles missing data for better biomarker panels.
problem Identifying relevant features from incomplete data sets.
method Nonparametric variable selection combined with multiple imputation.
result Improved biomarker panels with higher classification and variable selection performance.
MIM adds indicator variables to improve model performance on incomplete data.
problem Missing data in incomplete data sets.
method Missing Indicator Method (MIM) and Selective MIM (SMIM).
result MIM improves model performance for informative missing values and high-dimensional data.
A probabilistic query may not be estimable from observed data corrupted by missing values if the data are not missing at random (MAR). It is therefore of theoretical interest and practical importance to determine in principle whether a probabilistic query is estimable from missing data or not when the data are not MAR.…
In data-mining applications, we are frequently faced with a large fraction of missing entries in the data matrix, which is problematic for most discriminant machine learning algorithms. A solution that we explore in this paper is the use of a generative model (a mixture of Gaussians) to compute the conditional expectat…
The paper explores how missing data problems are related to causal inference.
problem Missing data in experiments makes causal inference difficult.
method The paper reinterprets missing data as a form of causal inference by considering counterfactual variables.
result Identification assumptions in missing data can be encoded using graphical models of counterfactual and observed variables.
missForestPredict fills missing data for prediction models quickly and accurately.
problem Missing data in input variables for prediction models.
method Iterative imputation using random forests until convergence.
result missForestPredict outperforms other imputation methods in prediction settings.
New method uses MMD estimators to enforce model invariance with missing data.
problem Models trained on missing data can fail on related test distributions.
method Derives MMD estimators for enforcing model invariance under missing nuisances.
result Optimizing through MMD estimates achieves similar test performance to using full data.
Selective imputation improves treatment effect estimation from missing data.
problem Missing data complicates treatment effect estimation, especially with treatment variables.
method Introduced mixed confounded missingness (MCM) and selective imputation.
result Selective imputation provides unbiased treatment effect estimates.
Modern data acquisition based on high-throughput technology is often facing the problem of missing data. Algorithms commonly used in the analysis of such large-scale data often depend on a complete set. Missing value imputation offers a solution to this problem. However, the majority of available imputation methods are…
Efficient SGPRN model for imputation and visualization of missing data.
problem Imputation and visualization of missing data in time-varying correlation.
method Stochastic collapsed variational inference with structured Gaussian process regression network.
result Our model provides better imputation results on missing data than state-of-the-art methods.
Proposes a method to select features for subgroup datasets with systematic missing data.
problem Feature selection for datasets with subgroup structure and systematic missing data.
method Develops a heterogeneous graph neural network to propagate information between feature-subgroup-target variable connections.
result Demonstrates improved feature selection performance and scalability.
Proposes a method to infer causal effects from incomplete data using latent confounders.
problem Missing data complicates causal inference, especially for non-linear models.
method Uses variational autoencoders to learn latent confounders and incorporate missing values.
result Demonstrates effectiveness of the method, especially for non-linear models.
Estimates vaccine effectiveness and immune correlates in TND studies with missing data.
problem Confounding and missing data in TND studies of vaccine effectiveness and immune correlates.
method Targeted maximum likelihood estimation using a semiparametric logistic regression model.
result Valid causal inference of vaccine effectiveness and immune correlates in TND studies with missing exposure data.
New framework predicts 5-year glucose values with missing data.
problem Significant missing data in longitudinal glucose studies.
method Reproducing Kernel Hilbert Spaces (RKHS) with missing responses analysis.
result Identifies new factors affecting long-term glucose evolution.
Tree-based LSTM improves sequential regression with missing data.
problem Regression for variable-length sequential data with missing samples.
method Tree architecture of LSTM networks, selecting LSTM networks based on presence-pattern of previous inputs.
result Significant performance improvements on financial and real-life datasets.
Estimates disease prevalence using non-ignorable missing data in health surveys.
problem Estimating disease prevalence in non-representative samples with non-ignorable missing data.
method Connects auxiliary proxy variable framework to label shift setting, uses high-dimensional covariates without generative models.
result Fails to account for non-ignorable missingness can lead to significant misestimations.
AR model forecasts partially observed dynamical time series by estimating evolution function and imputing missing variables.
problem Forecasting dynamical time series with missing variables.
method Autoregressive with slack time series (ARS) model.
result ARS model forecasts future time series with time-invariant and linear assumptions.
A new method for handling missing values in data.
problem Handling missing values in machine learning models.
method Sharing pattern submodels with sparsity-inducing regularization.
result Sharing pattern submodels provide robust predictions and maintain/improve pattern submodel performance.
Autoencoder improves imputation across various missing data types.
problem Efficiently impute missing data in diverse datasets.
method Developed a deep autoencoder framework for consistent training and imputation.
result Autoencoder outperformed state-of-the-art methods in all experiments.
We introduce a Bayesian Gaussian process latent variable model that explicitly captures spatial correlations in data using a parameterized spatial kernel and leveraging structure-exploiting algebra on the model covariance matrices for computational tractability. Inference is made tractable through a collapsed variation…
This paper compares imputation and direct parameter estimation methods for missing data in correlation matrix visualization.
problem Missing data challenges in estimating correlation coefficients for accurate visualization.
method Comparison of imputation and direct parameter estimation methods for handling missing data.
result Direct parameter estimation (DPER) outperforms imputation for accurate correlation matrix visualization.
Improves Gower's similarity for mixed-type variables with automatic weighting.
problem Handling missing values and unbalanced variable contributions in Gower's similarity for mixed-type data.
method Automatic weighting scheme minimizing differences in correlation between contributing dissimilarities and weighted Gower's dissimilarity.
result Improved performance in classification and imputation of missing values.
DIVE learns video representations even with missing data.
problem Missing data in video sequences.
method Disentangled Imputed Video autoEncoder (DIVE) with missingness latent variable.
result DIVE outperforms state-of-the-art baselines in imputing and predicting missing video frames.
Study examines parallel computing strategies for faster imputation of missing data.
problem Time-consuming iterative imputation methods for large datasets.
method Variable-wise and model-wise distributed parallel computing strategies in missForest.
result Variable-wise distributed strategy introduces additional biases in imputation results.
Gaussian Processes improve missing value imputation in datasets.
problem Handling missing values in large datasets.
method Sparse Gaussian Processes combined with stochastic variational inference.
result MGP significantly outperforms other imputation methods.
Deep learning for missing data with flexible modelling.
problem Missing data with missingness dependent on the missing values.
method Deep latent variable models with a neural network for missingness pattern modeling, importance-weighted variational inference, and stochastic gradients.
result Explicitly modelling missingness improves inference on various data sets.
Missing values widely exist in many real-world datasets, which hinders the performing of advanced data analytics. Properly filling these missing values is crucial but challenging, especially when the missing rate is high. Many approaches have been proposed for missing value imputation (MVI), but they are mostly heurist…
Bayesian approach models nonignorable missing data using copulas and marginal quantiles.
problem Nonignorable missing data in lead exposure and test score analysis.
method Gaussian copula model with auxiliary marginal quantiles for missingness indicators and study variables.
result Efficient MCMC algorithm estimates copula correlation and marginal distributions consistently.
We consider the problem of learning parameters of latent variable models from mixed (continuous and ordinal) data with missing values. We propose a novel Bayesian Gaussian copula factor (BGCF) approach that is consistent under certain conditions and that is quite robust to the violations of these conditions. In simulat…
In this paper, a scale mixture of Normal distributions model is developed for classification and clustering of data having outliers and missing values. The classification method, based on a mixture model, focuses on the introduction of latent variables that gives us the possibility to handle sensitivity of model to out…
HH-VAEM improves imputation and acquisition of missing data using hierarchical models and Hamiltonian Monte Carlo.
problem Imputation and acquisition of missing heterogeneous data.
method Hierarchical VAE model with Hamiltonian Monte Carlo and automatic hyper-parameter tuning.
result HH-VAEM outperforms existing methods in imputation and supervised learning tasks.
New method models longitudinal data using variational inference and normalizing flows.
problem Handling high-dimensional longitudinal data with time dependency.
method Variational inference with normalizing flows for latent variables.
result The method achieves better likelihood estimates and more reliable missing data imputation.
ELMV uses ensemble learning to handle missing values in EHR data.
problem Significant missing values in EHR data cause bias and unreliable conclusions.
method ELMV constructs multiple subsets with lower missing rates and uses a support set for ensemble learning.
result ELMV outperforms conventional methods in critical feature identification and outcome prediction.
Framework for joint learning of tasks on dementia data with missing values.
problem Lack of multi-task learning, handling time-dependent data, and missing values in dementia forecasting.
method Proposes SSHIBA model using Bayesian variational inference for imputation and combined information from different views.
result SSHIBA model outperforms baselines in predicting diagnosis, ventricle volume, and clinical scores in dementia.
New model handles missing data effectively in autoregressive models.
problem Handling missing data in autoregressive models.
method Reinterpret existing models through missing data lens, introduce principled framework for incomplete datasets, active information acquisition.
result MO-ARM consistently outperforms imputation baselines across real-world benchmarks.
In many application settings, the data have missing entries which make analysis challenging. An abundant literature addresses missing values in an inferential framework: estimating parameters and their variance from incomplete tables. Here, we consider supervised-learning settings: predicting a target when missing valu…