MedGraph learns patient visit embeddings from EMRs, capturing both attributes and temporal sequences.
problem Limited EMR embedding methods fail to capture patient demographics, utilisation, and code descriptions.
method MedGraph constructs an attributed bipartite graph and uses a point process to model temporal sequences.
result MedGraph outperforms state-of-the-art methods in medical risk prediction tasks.
Paper uses AI to predict medications from medical codes, improving accuracy in healthcare.
problem Predicting medications from incomplete or incorrect medical codes is challenging.
method Robust Recurrent Neural Networks (RNNs) with decay mechanism and noise injection.
result The method accurately predicts medication orders from contaminated medical codes.
We propose using canonical correlation analysis (CCA) to generate features from sequences of medical billing codes. Applying this novel use of CCA to a database of medical billing codes for patients with diverticulitis, we first demonstrate that the CCA embeddings capture meaningful relationships among the codes. We th…
Enhances medical code predictions for multi-morbidity patients using text classification.
problem Improving accuracy in predicting medical codes for patients with multiple illnesses.
method Used machine learning techniques, including multi-label medical text classification, to enhance predictions.
result High dimensional embeddings pre-trained on health data significantly improve multi-label classification performance.
Clinical notes are text documents that are created by clinicians for each patient encounter. They are typically accompanied by medical codes, which describe the diagnosis and treatment. Annotating these codes is labor intensive and error prone; furthermore, the connection between the codes and the text is not annotated…
Framework harmonizes EHR data across institutions for better analysis.
problem Heterogeneity of medical codes and terminologies hinder EHR data analysis.
method MASH (Multi-source Automated Structured Hierarchy) uses neural optimal transport and learned hyperbolic embeddings to align and structure EHR data.
result MASH generates interpretable hierarchical graphs for unstructured local laboratory codes.
This study applies neural models to automatically recognize medical entities from natural language.
problem Automated recognition of medical entities from natural language is complex and time-consuming.
method Utilizes deep neural sequence models trained on a large dataset of death certificates.
result Deep neural models can efficiently recognize medical entities from natural language.
BERT-XML automates ICD coding from EHR notes using BERT pretraining.
problem Manual ICD coding is time-consuming and expensive in hospitals.
method Trained a BERT model on EHR notes, adapting it for multi-label attention.
result First large-scale ICD-10 classification model using millions of EHR notes.
TAPER learns unified patient EHR representations for healthcare tasks.
problem Irregular and multimodal data in electronic health records.
method Transformer networks and BERT for embedding structured and unstructured data.
result TAPER model outperforms on mortality, readmission, and length of stay tasks.
Text2Node maps medical phrases to a taxonomy, overcoming coding standard limitations.
problem Limited data interchangeability between EHR systems due to different coding standards.
method Text2Node uses word and node embeddings, along with mapping functions, to generalize from limited training data.
result Text2Node achieves high accuracy in mapping phrases to a taxonomy, even for unseen concepts.
Enhances understanding of patient healthcare journeys using self-attention.
problem Capturing hidden dependencies in multi-level patient journey data.
method Proposes a multi-level self-attention network (MusaNet) for encoding patient journeys.
result MusaNet produces higher-quality representations than state-of-the-art methods.
Enhances detection of adverse drug events using diverse healthcare record data.
problem Detecting adverse drug events from mixed data types in electronic health records.
method Aggregate diagnosis codes, drug codes, and lab measurements; use recursive feature selection.
result Significant improvement in AUC using additional features, statistically significant.
AI generates a sequence of death causes from hospital records.
problem Accurate death reporting for vital statistics and policy formulation.
method Neural machine translation models to generate causal chains, incorporating medical domain knowledge.
result Achieved 16.04 BLEU score for generating accurate causal chains.
Paper proposes embedding medical concepts from claims data for better risk adjustment models.
problem Lack of efficient representation of medical histories in risk adjustment models.
method Semantic embeddings of medical concepts from diagnostic, procedure, and prescription codes.
result Embedding-based models outperform commercial risk adjustment models in prospective risk score prediction.
We investigate the automatic classification of patient discharge notes into standard disease labels. We find that Convolutional Neural Networks with Attention outperform previous algorithms used in this task, and suggest further areas for improvement.
Machine learning constructs problem-based medical records from electronic health records.
problem Difficulty in finding relevant medical information for clinical questions.
method Knowledge base completion using machine learning on electronic health records.
result Automatic construction of problem-based groupings of medications, procedures, and lab tests.
Unsupervised learning summarizes EHR data into a patient status vector.
problem Challenges in modeling electronic health records due to irregularities and varying procedures/diagnoses.
method Two-step unsupervised representation learning scheme using auto-encoders and forecasting tasks.
result Improved generalization performance on mortality and readmission tasks.
Paper detects biases in medical imaging ML models using counterfactual analysis.
problem Bias in medical imaging ML models negatively impacts generalization performance.
method Counterfactual invariance framework combining conditional latent diffusion models and statistical hypothesis testing.
result The method identifies and quantifies biases without direct access to counterfactual data.
Characterization of a patient clinical phenotype is central to biomedical informatics. ICD codes, assigned to inpatient encounters by coders, is important for population health and cohort discovery when clinical information is limited. While ICD codes are assigned to patients by professionals trained and certified in c…
This paper identifies and addresses biases in medical imaging research.
problem Challenges in medical imaging research, including biases in datasets, methods, and evaluation metrics.
method Literature review and analysis of potential biases.
result Recommendations to counteract biases in future research.
TPM improves medical image segmentation by separating foreground and background.
problem Few-shot medical image segmentation challenges due to background variability.
method Tied Prototype Model (TPM) focusing on foreground, adapting thresholds, and using class priors.
result TPM leads to improved segmentation accuracy compared to ADNet.
Predicting highrisk vascular diseases is a significant issue in the medical domain. Most predicting methods predict the prognosis of patients from pathological and radiological measurements, which are expensive and require much time to be analyzed. Here we propose deep attention models that predict the onset of the hig…
Sparse coding has been popularly used as an effective data representation method in various applications, such as computer vision, medical imaging and bioinformatics, etc. However, the conventional sparse coding algorithms and its manifold regularized variants (graph sparse coding and Laplacian sparse coding), learn th…
What has happened in machine learning lately, and what does it mean for the future of medical image analysis? Machine learning has witnessed a tremendous amount of attention over the last few years. The current boom started around 2009 when so-called deep artificial neural networks began outperforming other established…
Feature engineering remains a major bottleneck when creating predictive systems from electronic medical records. At present, an important missing element is detecting predictive regular clinical motifs from irregular episodic records. We present Deepr (short for Deep record), a new end-to-end deep learning system that …
Study compares DL models for medical image segmentation, finds synergistic ensemble strategies improve performance.
problem Improving DL models for specialized medical image segmentation using transfer learning.
method Detailed comparisons of TII and LMI models for binary segmentation of medical images.
result Ensemble strategies improve performance by 10% in certain scenarios.
Somed2Vec learns medical concept embeddings from SNOMED-CT, improving healthcare analytics.
problem Lack of effective vector representations for medical concepts in healthcare analytics.
method Graph-based representation learning using random walks and Poincaré embeddings on SNOMED-CT.
result Concept embeddings from SNOMED-CT significantly outperform state-of-the-art embeddings.
A new SSL method improves medical image classification using global latent mixing.
problem Costly annotation of large-scale medical image data sets.
method Linear mixing of labeled and unlabeled data in both input and latent space.
result Improved performance in semi-supervised classification of thoracic disease and skin lesion.
A reinforcement learning method predicts medical outcomes from masked feature vectors.
problem Predicting medical outcomes from limited feature data.
method Reinforcement learning with iterative feature selection and a guesser network.
result The method outperforms baselines and is highly interpretable.
Bayes-CATSI uses variational Bayesian deep learning for medical time series data imputation.
problem Missing values in medical time series data.
method Bayes-CATSI integrates variational inference for uncertainty quantification and context-aware imputation.
result Bayes-CATSI outperforms CATSI by 9.57% in imputation performance.
Method generates anatomically-controllable medical images with segmentation guidance.
problem Challenging to enforce anatomical constraints in generated medical images.
method Segmentation-guided diffusion models with random mask ablation training.
result New state-of-the-art in faithfulness to input anatomical masks.
TNC learns time series representations by leveraging temporal neighborhoods.
problem Complex, unlabeled time series data.
method Temporal Neighborhood Coding (TNC) with a debiased contrastive objective.
result TNC outperforms other unsupervised methods in time series clustering and classification.
Deep learning models exhibit state-of-the-art performance for many predictive healthcare tasks using electronic health records (EHR) data, but these models typically require training data volume that exceeds the capacity of most healthcare systems. External resources such as medical ontologies are used to bridge the da…
Evaluating the clinical similarities between pairwise patients is a fundamental problem in healthcare informatics. A proper patient similarity measure enables various downstream applications, such as cohort study and treatment comparative effectiveness research. One major carrier for conducting patient similarity resea…
The paper explores how neural networks generalize differently from natural and medical images.
problem Discrepancies in generalization error between natural and medical images.
method Established and empirically validated a generalization scaling law with respect to intrinsic dataset properties.
result Higher intrinsic 'label sharpness' of medical images leads to higher adversarial vulnerability.
TorchIO simplifies medical image processing for deep learning.
problem Challenges in processing medical images like MRI and CT.
method Efficient loading, preprocessing, augmentation, and patch-based sampling.
result Enables researchers to focus on deep learning experiments.
This study presents a multimodal machine learning model to predict ICD-10 diagnostic codes. We developed separate machine learning models that can handle data from different modalities, including unstructured text, semi-structured text and structured tabular data. We further employed an ensemble method to integrate all…
This work improves medical image segmentation with limited annotations using contrastive learning.
problem Lack of labeled data for medical image segmentation.
method Contrastive learning framework for semi-supervised segmentation with domain-specific and problem-specific cues.
result Significant improvements in segmentation performance compared to other methods.
We show how to learn low-dimensional representations (embeddings) of patient visits from the corresponding electronic health record (EHR) where International Classification of Diseases (ICD) diagnosis codes are removed. We expect that these embeddings will be useful for the construction of predictive statistical models…
Flow-SSN improves segmentation efficiency and accuracy.
problem Challenges in medical imaging segmentation, especially high-rank pixel-wise covariances.
method Generative segmentation model using discrete-time autoregressive and continuous-time flow variants.
result Flow-SSNs can estimate high-rank pixel-wise covariances efficiently without assuming rank or storing parameters.
Double InfoGAN improves CA by generating clearer, more accurate images.
problem Improper latent variable models in CA lead to sub-optimal solutions.
method Double InfoGAN, a GAN-based method enforcing fundamental assumptions and improving image quality.
result Double InfoGAN outperforms SOTA CA-VAEs in latent separation and image quality.
Bayesian Gaussian Processes layer detects out-of-distribution data in medical imaging.
problem Detecting out-of-distribution data in medical imaging tasks.
method Parameter-efficient hierarchical convolutional Gaussian Processes in Wasserstein-2 space.
result Uncertainty estimates enable superior out-of-distribution detection compared to previous methods.
We have recently seen many successful applications of recurrent neural networks (RNNs) on electronic medical records (EMRs), which contain histories of patients' diagnoses, medications, and other various events, in order to predict the current and future states of patients. Despite the strong performance of RNNs, it is…
Deep tabular models outperform GBDT in medical diagnosis tasks.
problem Transfer learning for tabular data in medical diagnosis.
method Proposes a pseudo-feature method for transfer learning between different feature sets.
result Tabular neural networks outperform GBDT in medical diagnosis tasks.
System predicts HIV patients at risk of dropping out of care.
problem High non-adherence and dropout rates among HIV patients.
method Predictive machine learning model based on resource constraints, stability, and fairness.
result Model performs 3x better than baseline for clinical use and 2.3x better for city-wide use.
3D ConvNets improved with Project & Excite for medical imaging segmentation.
problem Improving segmentation performance in 3D medical imaging.
method Proposed Project & Excite (PE) modules for 3D F-CNNs, extending 2D recalibration methods.
result Project & Excite modules boost segmentation performance up to 0.3 in Dice Score.
Deep learning models predict ICU readmission with varying accuracy.
problem Predicting ICU readmission risk using deep learning architectures.
method Several deep learning architectures including attention-based models, recurrent layers, neural ODEs, and embeddings were trained on MIMIC-III data.
result Attention-based models with neural ODEs achieved highest predictive accuracy.
New benchmark evaluates BDL methods in medical retinopathy diagnosis.
problem Evaluate robustness and scalability of BDL methods in medical applications.
method Developed a new benchmark with real-world diabetic retinopathy tasks.
result Some BDL techniques overfit uncertainty to datasets, underperforming on new benchmark.