Study compares tree-based imputation methods to MICE PMM for missing data.
problem Missing data in empirical studies.
method Various imputation methods including MICE PMM, RF, missRanger, and MIXGBoost.
result Tree-based imputations, especially RF and missRanger with PMM, perform better.
PMM uses Bayesian inference to generate data from noisy approximations.
problem Creating flexible generative models for various data types.
method Bayesian inference and conjugate pairs of distributions.
result PMM achieves performance competitive with existing generative models.
In this paper, we consider high-dimensional nonconvex square-root-loss regression problems and introduce a proximal majorization-minimization (PMM) algorithm for these problems. Our key idea for making the proposed PMM to be efficient is to develop a sparse semismooth Newton method to solve the corresponding subproblem…
tBayes-MICE uses Bayesian MICE for time series data imputation.
problem Missing data in time series data.
method Bayesian MICE with MCMC, temporal features, and different samplers.
result tBayes-MICE reduces imputation errors and accounts for uncertainty.
Bayesian parametric matrix models provide uncertainty quantification for spectral learning.
problem Uncertainty quantification in spectral learning for safety-critical applications.
method Bayesian parametric matrix models (B-PMMs) that extend PMMs to provide uncertainty estimates.
result B-PMMs achieve exceptional uncertainty calibration (ECE < 0.05) while maintaining favorable scaling.
Deep learning models outperform MICE in large survey imputation but with hyperparameter tuning.
problem Comparing deep learning and MICE for missing data imputation in large surveys.
method Extensive simulation studies comparing four machine learning-based MI methods: MICE with classification trees, MICE with random forests, generative adversarial imputation networks, and multiple imputation using denoising autoencoders.
result MICE with classification trees consistently outperforms deep learning methods in terms of bias, mean squared error, and coverage.
The Viterbi process can be extended indefinitely in a pairwise Markov model.
problem Estimating hidden chains in pairwise Markov models.
method Construction of barriers to ensure Viterbi path goes through states.
result The Viterbi process is regenerative in the PMM.
This study improves lung tumor segmentation in mice MRI scans with nnU-Net, reducing annotation needs.
problem Accurate lung tumor segmentation in mice MRI scans for drug discovery.
method Optimized nnU-Net 3D model for lung tumor segmentation with minimal annotations.
result nnU-Net 3D models outperform 2D models in MRI mice scans, requiring fewer annotations.
Paper compares MICE-based methods to deep generative models for synthetic data in ratemaking.
problem Limited access to high-quality data for actuarial ratemaking.
method Benchmarked MICE-based models against VAEs and CTA-GANs.
result MICE-based models preserve marginal distributions and multivariate relationships better than deep models.
Paper develops algorithms for sparse linear regression with generalized elastic net penalty.
problem Sparse linear regression with robust penalty for high-dimensional data.
method Iterative Reweighted Framework based on ADMM and PMM with SNN.
result Efficient algorithms provide superior performance in both simulated and real data.
This research improves capital efficiency and impermanent loss in cryptocurrency markets using multi-token trading pools.
problem Poor impermanent loss and capital efficiency in automated market makers.
method Analysis and construction of a multi-token token proactive market maker (MPMM).
result MPMM shows better impermanent loss and capital efficiency than comparable market makers.
Simulation study evaluates tree-based imputation methods for multi-level data.
problem Ignoring dependencies in hierarchical data can compromise imputation accuracy.
method Chained Random Forests and Extreme Gradient Boosting (mixgb) adapted for multi-level data.
result Adapted boosting methods outperform traditional MICE for Level-1 variables at higher missingness rates.
Given a high-dimensional data set we often wish to find the strongest relationships within it. A common strategy is to evaluate a measure of dependence on every variable pair and retain the highest-scoring pairs for follow-up. This strategy works well if the statistic used is equitable [Reshef et al. 2015a], i.e., if, …
Automated model tracks mouse behavior in home cages.
problem Confounding analysis in specialized arenas.
method Group Behaviour Model (GBM) using permutation matrix.
result Model captures individual and group behavior.
In exploratory data analysis, we are often interested in identifying promising pairwise associations for further analysis while filtering out weaker, less interesting ones. This can be accomplished by computing a measure of dependence on all variable pairs and examining the highest-scoring pairs, provided the measure o…
Six AI solutions accurately detect growth plate planes in mice bone scans.
problem Manual, time-consuming, and variable bone growth plate detection in micro-CT scans.
method Prepared and annotated a dataset of 3D μCT scans, organized a challenge, and developed six computer vision solutions.
result Achieved mean absolute error of 1.91±0.87 planes from ground truth.
In real-world applications, we can encounter situations when a well-trained model has to be used to predict from a damaged dataset. The damage caused by missing or corrupted values can be either on the level of individual instances or on the level of entire features. Both situations have a negative impact on the usabil…
A new method for sampling on manifolds reduces density estimation errors.
problem Sampling on implicitly defined manifolds in various applications.
method Polynomial-Maximization Moment (PMM) estimator replacing local k-nearest-neighbour density estimate.
result Reduces density estimation errors by 22--36% on asymmetric gamma and boundary-spacing regimes.
Volumetric analysis of brain ventricle (BV) structure is a key tool in the study of central nervous system development in embryonic mice. High-frequency ultrasound (HFU) is the only non-invasive, real-time modality available for rapid volumetric imaging of embryos in utero. However, manual segmentation of the BV from H…
A new emulator connects observables directly from data.
problem Constructing fast and accurate surrogate models for robust predictions.
method Introduces Multiparameter Eigenvalue Problem (MEP) emulator trained with Eigenvector Continuation (EC) and Parametric Matrix Model (PMM) data.
result The MEP emulator can make predictions directly from observables to observables.
Paper proposes WGAIN for missing feature reconstruction.
problem Missing data in datasets.
method Wasserstein Generative Adversarial Imputation Network (WGAIN) compared to traditional methods.
result WGAIN outperforms traditional methods in imputing missing data.
Hippocampal dentate granule cells are among the few neuronal cell types generated throughout adult life in mammals. In the normal brain, new granule cells are generated from progenitors in the subgranular zone and integrate in a typical fashion. During the development of epilepsy, granule cell integration is profoundly…
We study the dynamics of correlation and variance in systems under the load of environmental factors. A universal effect in ensembles of similar systems under the load of similar factors is described: in crisis, typically, even before obvious symptoms of crisis appear, correlation increases, and, at the same time, vari…
MAYA learns bee foraging decisions with limited memory.
problem Reproducing and predicting bees' foraging decisions with limited memory.
method Sequential imitation learning model based on multi-armed bandits, considering a temporal window τ of 7 trials.
result MAYA outperforms imitation baselines and classical models, providing interpretability and realistic trajectories.
We propose a general statistical framework for clustering multiple time series that exhibit nonlinear dynamics into an a-priori-unknown number of sub-groups. Our motivation comes from neuroscience, where an important problem is to identify, within a large assembly of neurons, subsets that respond similarly to a stimulu…
Clustering, a fundamental activity in unsupervised learning, is notoriously difficult when the feature space is high-dimensional. Fortunately, in many realistic scenarios, only a handful of features are relevant in distinguishing clusters. This has motivated the development of sparse clustering techniques that typicall…
Paper tackles domain adaptation for contextual bandits with sub-linear regret.
problem Adapting contextual bandit algorithms across domains with distribution shift.
method Learn a bandit model for the target domain using feedback from the source domain.
result Sub-linear regret bound maintained across domains.
ChronoMID builds on the success of cross-modal convolutional neural networks (X-CNNs), making the novel application of the technique to medical imaging data. Specifically, this paper presents and compares alternative approaches - timestamps and difference images - to incorporate temporal information for the classificat…
LISBET automates social behavior analysis using machine learning.
problem Manual annotation of social behaviors is time-consuming, biased, and misses subtle interactions.
method Self-supervised learning on body tracking data.
result Automated detection and segmentation of social interactions.
Missing data is an expected issue when large amounts of data is collected, and several imputation techniques have been proposed to tackle this problem. Beneath classical approaches such as MICE, the application of Machine Learning techniques is tempting. Here, the recently proposed missForest imputation method has show…
Quantifying behavior is crucial for many applications in neuroscience. Videography provides easy methods for the observation and recording of animal behavior in diverse settings, yet extracting particular aspects of a behavior for further analysis can be highly time consuming. In motor control studies, humans or other …
missForestPredict fills missing data for prediction models quickly and accurately.
problem Missing data in input variables for prediction models.
method Iterative imputation using random forests until convergence.
result missForestPredict outperforms other imputation methods in prediction settings.
Spectral method speeds fitting of binary time series models.
problem Modeling binary time series data with latent linear dynamical systems.
method Spectral learning of probit-Bernoulli latent linear dynamical systems.
result Spectral method provides robust, fixed-cost estimator.
ABI adapts to graph data for fast, scalable inference.
problem Challenges in inference on graph-structured data.
method Amortized Bayesian Inference (ABI) framework for graph data.
result ABI successfully addresses challenges in graph data inference.
ODBAE detects complex phenotypes in biological data.
problem Challenges in identifying complex phenotypes from high-dimensional biological data.
method ODBAE (Outlier Detection using Balanced Autoencoders) identifies influential and high leverage points in latent relationships among multiple physiological parameters.
result ODBAE reveals novel metabolism-related genes and uncovers coordinated abnormalities across metabolic indicators.
Imputation of missing data is a common application in various classification problems where the feature training matrix has missingness. A widely used solution to this imputation problem is based on the lazy learning technique, k-nearest neighbor (kNN) approach. However, most of the previous work on missing data does…
New framework learns interaction rules from animal trajectories.
problem Challenges in extracting interaction rules from animal movement data.
method Augmented behavioral models with neural networks and theory-guided regularization.
result Improved performance over baselines and novel biological insights.
A new method uses deep Gaussian processes to handle missing values in irregularly sampled healthcare data.
problem Missing values and irregular sampling in healthcare data.
method Deep Gaussian process emulation with stochastic imputation.
result The method outperforms conventional imputation methods in clinical datasets.
PbP strategy improves logistic model prediction with missing values.
problem Predicting with missing inputs in logistic models.
method Pattern-by-Pattern (PbP) strategy for logistic models with missing values.
result PbP accurately approximates Bayes probabilities under GPMM across various missing data scenarios.
Blind Source Separation (BSS) has proven to be a powerful tool for the analysis of composite patterns in engineering and science. We introduce Convex Analysis of Mixtures (CAM) for separating non-negative well-grounded sources, which learns the mixing matrix by identifying the lateral edges of the convex data scatter p…
Noise in imputed values corrects biases in machine learning models.
problem Systematic biases in imputed values affect downstream analyses.
method Introducing noise to imputed values to correct biases.
result Noise-corrected imputation methods produce unbiased estimates.
Survey data imputation methods impact feature selection and importance assessment.
problem Impact of different imputation methods on feature selection and importance assessment in survey data.
method Investigated eight imputation methods (listwise deletion, MICE, missRanger, mixGBoost) and three learners (Random Forest, XGBoost, linear model) in a simulation study.
result Different imputation methods yield varying feature selection and importance assessments.
A method for identifying joint and individual subspaces from multi-view data.
problem Unclear conditions for reliably identifying joint and individual subspaces from noisy, high-dimensional measurements.
method Rigorously quantifies conditions based on signal rank, principal angles, and noise levels. Characterizes spectrum perturbations of product of projection matrices.
result Estimates joint and individual subspaces more accurately than existing approaches in simulations and real-world applications.
PS-VAE extracts multi-parameter MRI biomarkers with uncertainty quantification.
problem Uncertainty in inverse problems limits clinical acceptance of quantitative MRI methods.
method Physics-Structured Variational Autoencoder (PS-VAE) integrating physics simulator and self-supervised learning.
result PS-VAE provides full covariance of inter-parameter correlations and accelerates multi-parametric MRI quantification.
New Bayesian matrix completion method using Stiefel manifolds.
problem Efficient Bayesian matrix completion with uncertainty quantification.
method Geodesic Hamiltonian Monte Carlo on Stiefel manifolds.
result Improved sampling performance and accuracy on real-world problems.
SNI framework for mixed-type data imputation interprets and explains missing values.
problem Missing data in mixed-type databases skew analysis results.
method SNI couples statistical priors with neural attention to impute and explain missing values.
result SNI provides interpretable feature dependency diagnostics and soft regularization of attention.
Modern information technology services largely depend on cloud infrastructures to provide their services. These cloud infrastructures are built on top of datacenter networks (DCNs) constructed with high-speed links, fast switching gear, and redundancy to offer better flexibility and resiliency. In this environment, net…
Feature selection predicts immune state changes in RA mouse model.
problem Predicting the immune state change after RA immunotherapy.
method Feature selection algorithms applied to mouse CIA model data.
result Selected features predict both T cell markers and treatment efficacy.