Optimal Reeb graphs identified for polygon decomposition.
problem Investigating the topological structure of planar polygon decomposition.
method Using oriented Reeb graphs with a marked vertex for height functions.
result Described all possible optimal Reeb graphs for specific polygon configurations.
Optimizes causal effects on unknown graphs using Causal Entropy Optimization.
problem Optimizing causal effects in unknown causal graphs.
method Causal Entropy Optimization (CEO) framework that generalizes Causal Bayesian Optimization (CBO). Incorporates causal structure uncertainty in surrogate models and intervention selection.
result CEO achieves faster convergence to global optimum compared to CBO and improves upon sequential structure learning.
Optimal Euclidean structure minimizes energy in weighted toroidal graphs.
problem Finding the optimal Euclidean structure for weighted toroidal graphs.
method Minimizing Dirichlet energy over all possible Euclidean structures and realizations within a fixed homotopy class.
result The optimal Euclidean structure induces a weighted Delaunay decomposition.
Paper introduces HGSL for heterogeneous graphs, improving edge type and weight recovery.
problem Learning structure in heterogeneous graphs with multiple node and edge types.
method Proposes H2MN model for DGPs and derives alternating optimization method.
result Demonstrates superior performance on synthetic and real-world datasets.
Network structure optimization is a fundamental task in complex network analysis. However, almost all the research on Bayesian optimization is aimed at optimizing the objective functions with vectorial inputs. In this work, we first present a flexible framework, denoted graph Bayesian optimization, to handle arbitrary …
Paper proposes an algorithm to reconstruct optimal model structure from graph adjacency matrix.
problem Optimal model structure reconstruction from weighted colored graph adjacency matrix.
method Uses prize-collecting Steiner tree algorithm to reconstruct minimum spanning tree.
result Demonstrates the effectiveness of the prize-collecting Steiner tree algorithm for model structure reconstruction.
Graph learning from data represents a canonical problem that has received substantial attention in the literature. However, insufficient work has been done in incorporating prior structural knowledge onto the learning of underlying graphical models from data. Learning a graph with a specific structure is essential for …
Proposes HypCSE for enhanced hierarchical clustering.
problem Challenges in existing hierarchical clustering methods.
method Hyperbolic Continuous Structural Entropy (HypCSE) neural networks.
result Superior performance on seven datasets.
GACBO optimizes unknown causal graphs with interventions.
problem Optimizing a target variable on an unknown causal graph with interventions.
method Graph Agnostic Causal Bayesian Optimisation (GACBO) seeks to balance exploitation and exploration of causal structures and functions.
result GACBO outperforms baselines in simulated and real-world applications.
Proposes a new graph kernel framework using regularized Wasserstein distances.
problem Learning optimal transport distances for graph kernels.
method Introduces Regularized Wasserstein (RW) discrepancy with two regularization terms.
result Empirically validated method outperforms state-of-the-art methods.
IDGL learns better graph structure and embeddings iteratively.
problem Improving graph neural network node embeddings and graph structure.
method Iterative Deep Graph Learning framework that dynamically stops when graph structure optimizes for downstream tasks.
result IDGL consistently outperforms state-of-the-art baselines on nine benchmarks.
Efficiently learns DAG structures without cycles.
problem Learning DAG structures efficiently with constraints.
method Proposes DAG-NoCurl, a two-step algorithm to find and project acyclic graphs.
result Significantly improves efficiency over existing methods, often by more than one order of magnitude.
COPT optimizes graph distances via simultaneous optimal transport.
problem Learning graph representations unsupervisedly.
method Simultaneous optimization of dual transport plans between vertices and graph signals.
result COPT preserves spectral information and outperforms state-of-the-art methods.
Sparsity-constrained optimization is an important and challenging problem that has wide applicability in data mining, machine learning, and statistics. In this paper, we focus on sparsity-constrained optimization in cases where the cost function is a general nonlinear function and, in particular, the sparsity constrain…
cCBO optimizes interventions in causal graphs under constraints.
problem Finding optimal interventions in causal graphs with constraints.
method Exploits graph structure, uses Gaussian processes, and sequentially selects interventions.
result Successful trade-off between fast convergence and feasibility of interventions.
Causal inference improves heterophilic graph learning.
problem Capturing asymmetric node dependencies in graph learning.
method Intervention-based causal inference for graph structure learning.
result CausalMP achieves superior link prediction performance.
Graph Information Bottleneck (GIB) optimizes graph representations for robustness against adversarial attacks.
problem Challenges in learning graph representations due to structure and feature information.
method GIB is an information-theoretic principle that balances expressiveness and robustness by maximizing mutual information between representation and target, while constraining mutual information with input data.
result GIB-based models are more robust to adversarial attacks, achieving up to 31% improvement.
A new method for efficient portfolio optimization using graph structures.
problem Optimizing portfolio weights while reducing computational complexity.
method Hierarchical graph structures and Schur complement method.
result Optimal portfolio weights can be computed efficiently by inverting small submatrices.
Attributed graphs, which contain rich contextual features beyond just network structure, are ubiquitous and have been observed to benefit various network analytics applications. Graph structure optimization, aiming to find the optimal graphs in terms of some specific measures, has become an effective computational tool…
PASCO speeds up graph clustering for large graphs.
problem Efficiently clustering large graphs with many communities.
method Overlay method combining coarsening and parallel clustering.
result PASCO accelerates clustering with improved efficiency and quality.
SANS uses graph structure to find meaningful negatives for entity and relation embeddings.
problem Finding hard negatives for entity and relation embeddings in knowledge graphs.
method Structure Aware Negative Sampling (SANS) that selects negatives from a node's k-hop neighborhood.
result SANS finds semantically meaningful negatives and is competitive with state-of-the-art approaches.
GraphOpt learns the formation mechanism of graphs from observed structures.
problem Learning formation mechanisms from observed graphs with complex structural properties.
method GraphOpt uses maximum entropy inverse reinforcement learning to solve the link formation problem in a sequential decision-making process.
result GraphOpt discovers a latent objective function that can explain and transfer across different graphs.
Optimal coupling among random vectors with known statistics and correlation structure found using minimum spanning tree over measure-valued vertices.
problem Finding the optimal coupling among random vectors with known statistics and correlation structure.
method Formulating the problem as a minimum spanning tree over measure-valued vertices and solving it in two steps.
result Optimal coupling found using the minimum spanning tree approach.
In this paper, we propose an end-to-end graph learning framework, namely Deep Iterative and Adaptive Learning for Graph Neural Networks (DIAL-GNN), for jointly learning the graph structure and graph embeddings simultaneously. We first cast the graph structure learning problem as a similarity metric learning problem and…
A novel Gromov-Wasserstein learning framework is proposed to jointly match (align) graphs and learn embedding vectors for the associated graph nodes. Using Gromov-Wasserstein discrepancy, we measure the dissimilarity between two graphs and find their correspondence, according to the learned optimal transport. The node …
Convex optimization method infers latent structure in random dot product graphs.
problem Inferring latent probability matrix of random dot product graphs.
method Conic programming with nuclear norm regularization.
result Asymptotic consistency of probability estimates and recovery of latent structure.
New algorithm uses GNNs to optimize rewards in graph-structured data.
problem Optimizing rewards in molecule design with graph-structured data.
method Embedding permutation invariance into GNNs and using GNTK for regret bounds.
result First GNN confidence bound and phased-elimination algorithm with sublinear regret.
Proposes GST for efficient computation of generalized Sobolev transport on graph metrics.
problem Optimal transport for measures on graph metric spaces with limited flexibility.
method Introduces GST, a generalized variant of Sobolev transport that adapts to various geometric structures.
result GST is significantly faster than Orlicz-Wasserstein (OW) and demonstrates advantages in document classification and topological data analysis.
Surveying machine learning for solving graph optimization problems.
problem Solving combinatorial optimization problems on graphs requires algorithmic engineering.
method Surveying machine learning approaches for graph optimization.
result Machine learning offers new ways to solve graph optimization problems.
Optimal Transport Graph Neural Networks (OT-GNN) improves graph embeddings by using optimal transport.
problem Graph Neural Networks (GNN) often lose structural or semantic information when aggregating node embeddings.
method Combines optimal transport (OT) with parametric graph models to compute graph embeddings from Wasserstein distances between node embeddings and prototype point clouds.
result OT-GNN outperforms popular methods on molecular property prediction tasks and produces smoother graph representations.
Paper introduces a new metric to select optimal Graph Shift Operator for GNNs.
problem Empirical selection of Graph Shift Operator remains challenging.
method Introduces a novel alignment gain metric connecting geometric distortion to generalization bounds via spectral proxy.
result Provides a principled, computation-efficient criterion to rank and select optimal GSO.
Graph partitioning is the problem of dividing the nodes of a graph into balanced partitions while minimizing the edge cut across the partitions. Due to its combinatorial nature, many approximate solutions have been developed, including variants of multi-level methods and spectral clustering. We propose GAP, a Generaliz…
New method learns DAGs from data without acyclicity constraint.
problem Learning DAGs from data without imposing acyclicity.
method Sparse matrix factorization and ℓ1-penalized optimization. result Empirical success in recovering true graphs and almost-DAG graphs.
Neural network learns causal graph structure from data.
problem Inferring causal graph structure from observational and interventional data.
method Supervised training of a neural network on synthetic graphs.
result Learned model generalizes to new graphs, robust to distribution shifts, and outperforms existing methods.
Large graphs abound in machine learning, data mining, and several related areas. A useful step towards analyzing such graphs is that of obtaining certain summary statistics - e.g., or the expected length of a shortest path between two nodes, or the expected weight of a minimum spanning tree of the graph, etc. These sta…
COSMO learns DAG structure without acyclicity constraints.
problem Learning DAG structure from data efficiently and without constraints.
method Differentiable approximation of smooth orientation matrix.
result COSMO converges to acyclic solutions without evaluating acyclicity.
Optimizes experiment design for causal structure learning in linear models with cycles.
problem Causal structure learning from combined observational and interventional data in linear non-Gaussian cyclic models.
method Combinatorial characterization of equivalence classes, adaptive stochastic optimization, greedy policy with near-optimal performance guarantee, sampling-based estimator for reward function.
result Optimal experiment design reduces the equivalence class of causal graphs to a single true graph with a small number of interventions.
Graph Convolutional Neural Networks (GCNNs) are generalizations of CNNs to graph-structured data, in which convolution is guided by the graph topology. In many cases where graphs are unavailable, existing methods manually construct graphs or learn task-driven adaptive graphs. In this paper, we propose Graph Learning Ne…
Chordal graphs can be used to encode dependency models that are representable by both directed acyclic and undirected graphs. This paper discusses a very simple and efficient algorithm to learn the chordal structure of a probabilistic model from data. The algorithm is a greedy hill-climbing search algorithm that uses t…
DeepWalk embeddings converge on SBM graphs, recovering cluster structure.
problem Theoretical guarantees for DeepWalk embeddings on complex graphs.
method Solving a nonconvex optimization problem using random walks.
result DeepWalk embeddings on SBM graphs recover cluster structure with high probability.
Bayesian Optimization for graph node subset functions.
problem Optimizing functions over node subsets in graphs.
method Bayesian Optimization framework for combinatorial optimization on graphs.
result Effectiveness of the proposed BO framework on various graph types and tasks.
We present a novel framework based on optimal transport for the challenging problem of comparing graphs. Specifically, we exploit the probabilistic distribution of smooth graph signals defined with respect to the graph topology. This allows us to derive an explicit expression of the Wasserstein distance between graph s…
A novel method for comparing graphs of different sizes using Wasserstein distance.
problem Comparing non-aligned graphs of varying sizes.
method Optimal transport in graph comparison framework, solving a one-to-many assignment problem.
result Significant improvements in graph alignment and classification tasks.
Linear-time graph optimization using reinforcement learning.
problem Solving combinatorial optimization problems on real-world graphs.
method Graph neural network trained with reinforcement learning.
result Approximate solutions in linear time for various graph problems.
Generalizes Sobolev IPM for graph-based measures using Orlicz geometric structure.
problem Limitation of Le et al. (2025) framework to Lp geometry. method Generalizes Sobolev IPM through Orlicz geometric structure, employing convex functions to capture nuanced geometric relationships.
result GSI-M reduces to a simple univariate optimization problem, achieving remarkable computational efficiency.
ENCOD learns causal graphs efficiently without acyclicity constraints.
problem Learning causal graphical models from observational and interventional data.
method ENCOD uses optimization of edge likelihoods with separate orientation parameters.
result ENCOD efficiently recovers large graphs (hundreds of nodes) without acyclicity constraints.
This work proposes a method to learn graph structure for multivariate time series forecasting.
problem Improving multivariate time series forecasting by leveraging pairwise information.
method Learning a probabilistic graph model through optimizing mean performance over graph distribution parameterized by a neural network.
result Our method outperforms existing approaches in simplicity, efficiency, and performance.
Investigates sequential problems on graph structures and large action spaces.
problem Sequential decision-making on graph structures and large action spaces.
method Spectral bandits, side observations, influence maximization, kernel bandits, polymatroid bandits, function optimization, infinitely many-arms bandits.
result Contributions to graph and structured bandits.