Convolutional neural network improves assertion detection in multi-label clinical text.
problem Detecting assertions in multi-label clinical text with rich descriptions.
method Developed a CNN architecture for multi-label scope detection.
result At least 12% improvement over state-of-the-art on multi-label clinical text.
Improved negation detection in Dutch clinical texts using machine learning.
problem Extracting negation from clinical text for better model development.
method Comparison of rule-based and machine learning methods (biLSTM, RoBERTa).
result BiLSTM and RoBERTa models outperform rule-based method in F1 score, precision, and recall.
Framework improves clinical timeline reconstruction from text and tables.
problem Temporal precision and event timing in clinical narratives and EHRs.
method Retrieval-augmented multimodal alignment framework.
result Consistently improves absolute timestamp accuracy and temporal concordance.
Model predicts eligibility of cancer patients for clinical trials.
problem Clinical trials exclude many patients based on comorbidities and age.
method Deep neural networks trained on clinical trial protocols and free-texts.
result Model accurately predicts eligibility of clinical trial statements.
A neural network predicts medical codes from clinical notes with high accuracy and interpretability.
problem Lack of automated and accurate annotation of medical codes from clinical notes.
method Attentional Convolutional Network that aggregates and selects relevant segments of clinical notes.
result Achieved precision@8 of 0.71 and Micro-F1 of 0.54, better than prior methods.
GRNN predicts multiple medical concepts from patient discharge summaries.
problem Understanding medical concepts in patient discharge summaries.
method Grounded Recurrent Neural Network (GRNN) that ties labels to specific dimensions of the hidden state.
result GRNN outperforms baselines in predicting medical concepts from discharge summaries.
Automatically extracts phenotypes from cancer clinical notes for genetic studies.
problem Lack of structured patient representations in EHRs.
method Clustering of medical terms and sentences in clinical notes.
result 341 significant associations between clinical features and somatic mutations.
Improved model predicts ICU readmission and mortality with interpretable results.
problem Lack of clinically interpretable predictions from deep learning models on clinical notes.
method Augmented a convolutional model with an attention mechanism for clinical note prediction.
result Attention mechanism improves prediction performance while providing interpretable results.
Paper presents a multi-view ensemble model for classifying clinically actionable genetic mutations.
problem Classifying clinically actionable genetic mutations from text evidence.
method Developed a multi-view machine learning framework with ensemble classification models.
result Submitted an ensemble of nine basic gradient boosting models achieving top performance in NIPS 2017 Competition Track IV.
Method augments CTNs for ICD coding with neural network imputation.
problem Time-consuming manual annotation of CTNs for ICD coding.
method Semi-self-supervised neural network imputation of clinical features.
result Data augmentation improves ICD coding performance significantly.
Paper improves relation extraction in clinical texts with limited data.
problem Relation extraction in narrow knowledge domains with scarce annotated data.
method Introduces a bag-of-concepts (BoC) model and compares it with window-bounded co-occurrence (WBC).
result BoC model outperforms baseline and other complex methods on small dataset.
Study proposes a multimodal model for cardiovascular risk prediction using EHRs.
problem Lack of comprehensive risk prediction from EHRs due to unstructured text.
method Proposes a multimodal BiLSTM model integrating structured and unstructured EHR data.
result Proposed BiLSTM model outperforms other DNN architectures in cardiovascular risk prediction.
Deep learning predicts readmissions from less structured data.
problem Predicting readmissions from non-standard, unstructured medical records.
method Proposes a deep learning architecture that handles less structured data, including Spanish text.
result Achieves AUROC of 0.76 on a Chilean medical dataset, comparable to US results.
Late fusion of clinical notes and physiological data improves ICU mortality prediction.
problem Improving ICU mortality prediction using multimodal data.
method Late fusion of clinical notes and physiological time series data with a deep learning architecture.
result Late fusion approach provides statistically significant improvement in mortality prediction performance.
This study shows unstructured clinical notes can improve mortality prediction.
problem Lack of effective use of unstructured clinical notes in mortality prediction.
method Used a hierarchical architecture with convolutional and recurrent layers to predict in-hospital mortality from unprocessed clinical notes.
result Achieved higher metrics in mortality prediction compared to structured data approaches.
BioFinBERT analyzes sentiment of biotech press releases and financial text around inflection points.
problem Analyzing sentiment of biotech press releases and financial text around inflection points.
method Finetuning BioBERT on financial datasets to create BioFinBERT for sentiment analysis.
result BioFinBERT accurately analyzes sentiment of biotech press releases and financial text around inflection points.
Study examines biases in clinical word embeddings, revealing performance gaps across groups.
problem Biases in clinical word embeddings leading to performance differences across groups.
method Pretrained BERT models on MIMIC-III, fill-in-the-blank method, fairness evaluation on clinical tasks.
result Classifiers trained from BERT representations exhibit statistically significant differences in performance across groups.
ML-Net improves multi-label text classification in biomedicine.
problem Challenges in multi-label text classification, especially in biomedicine.
method End-to-end deep learning framework combining label prediction and automated label count prediction.
result Significantly outperforms state-of-the-art methods in multi-label classification of biomedical texts.
Enhanced mortality prediction model using EHR and free-text data.
problem Predicting one-year mortality in AMI patients.
method Used deep learning models with word embedding features from free-text discharge summaries.
result Significant improvement in model performance (92.89% accuracy, 0.928 F-measure).
Study re-evaluates MIMIC-III codes, finding many are under-coded.
problem Validity of MIMIC-III clinical codes is questionable.
method Open-source, reproducible methodology for assessing codes.
result Most frequently assigned codes are under-coded up to 35%
Custom NLP system extracts clinical data for breast cancer analysis.
problem Manual extraction of information from text-based medical records is tedious and requires specialized knowledge.
method Combines standard text mining techniques with advanced synonym detection for global analysis.
result Achieved good extraction accuracy for various concepts of interest without requiring existing corpora or ontologies.
Enhances medical code predictions for multi-morbidity patients using text classification.
problem Improving accuracy in predicting medical codes for patients with multiple illnesses.
method Used machine learning techniques, including multi-label medical text classification, to enhance predictions.
result High dimensional embeddings pre-trained on health data significantly improve multi-label classification performance.
Representation learning improves EHR data for healthcare tasks.
problem Transforming EHR data into useful representations for machine learning.
method Deep learning and disentangling underlying factors from EHR data.
result Better representations improve machine learning performance in healthcare.
Deep learning predicts mental disorders from audio and text samples.
problem Predicting mental disorders from speech samples.
method Multimodal deep learning structure using various pre-trained models for audio and text embeddings, transfer learning, and auxiliary corpora.
result Acceptable accuracy in predicting mental disorders through multimodal analysis.
A single BLSTM network tackles ambiguous words in text data.
problem Ambiguity in text data, especially in technical domains.
method Proposes a single Bidirectional LSTM network for all ambiguous words.
result Comparable performance to top WSD algorithms on SensEval-3 benchmark.
New embeddings for medical concepts from multimodal data surpass previous methods.
problem Lack of comprehensive embeddings for medical concepts.
method Combining large datasets of medical notes, claims, and journal articles to learn embeddings.
result cui2vec embeddings achieve state-of-the-art performance.
Dynamic Transfer Networks improve NER from clinical notes with less data.
problem Improving named entity recognition from clinical notes with limited data.
method Dynamic Transfer Networks (DTN) using parameter sharing and gating architecture.
result DTN achieves better NER performance with fewer training settings.
Tsetlin Machine improves text categorization accuracy and interpretability.
problem High accuracy and interpretability in medical text categorization.
method Representing text as propositional variables, capturing categories with simple formulae, and using the Tsetlin Machine to learn these formulae.
result Tsetlin Machine outperforms other methods on various datasets, delivering best recall and precision.
Deep learning models improved sentence similarity in medical records.
problem Improving sentence similarity in electronic medical records.
method Developed models using traditional machine learning and deep learning approaches, pre-trained sentence embeddings on biomedical corpora.
result Ensembled model achieved a Person correlation coefficient of 0.8528.
Proposes isotonic regression for calibrating Deep Cox models' survival probabilities.
problem Poor calibration of Deep Cox models' survival probabilities.
method Isotonic regression for post hoc calibration of Deep Cox models.
result Establishes favorable theoretical guarantees and demonstrates empirical effectiveness.
New method uses artificial data to improve biomedical text tagging.
problem Lack of labeled data for biomedical tasks.
method Fine-tuning a pre-trained encoder with additional artificial labeled instances.
result Achieved state-of-the-art performance in PICO annotation.
Brain2Char decodes text from brain recordings, achieving state-of-the-art performance.
problem Directly decoding text from brain recordings for communication.
method Combines 3D Inception layers, bidirectional recurrent layers, and language model weighted beam search. Uses CTC loss and auxiliary losses for regularization.
result Achieves 10.6%, 8.5%, and 7.0% WER on vocabulary sizes from 1200 to 1900 words.
AACE learns treatment policies from EHRs using annotations to improve accuracy.
problem Learning treatment policies from multimodal EHRs with bias and inefficiency.
method Annotation-assisted coarsened effects (AACE) method.
result AACE outperforms existing methods in predicting treatment benefit from multimodal EHRs.
Deep learning predicts ICU mortality with enhanced interpretability.
problem Improving mortality prediction accuracy and clinician trust in AI.
method Trained a deep learning model on MIMIC-III to interpret nursing notes.
result Model reaches ROC of 0.8629, outperforming SAPS-II.
Proposes a method to infer causal effects from unstructured outcomes like text and images.
problem Traditional causal inference methods are inadequate for outcomes like text and images.
method Identifies the maximally contrasting feature (MCF) and learns a feature-scoring function to estimate causal effects.
result The method recovers salient aspects of outcomes changed by treatments in text and image settings.
Algorithm detects surgical site infections from hospital data.
problem Reduces incidence of surgical site infections in hospitals.
method Machine learning algorithms trained on hospital data.
result Identifies all SSIs with minimal false positives.
MedCAT extracts valuable medical information from unstructured text.
problem Extracting structured information from unstructured biomedical documents.
method Unsupervised machine learning for disambiguation of entities.
result Improved entity detection and linking compared to existing tools.
The paper predicts diseases using both clinical and genomics data.
problem Clinical predictions using genomics data are not common.
method Integrated clinical and genomics datasets, machine learning, Principal Component Analysis for feature selection.
result 73% accuracy in predicting 75 disease classes.
SparseVM registers clinical 3D scans faster and more accurately.
problem Inaccurate and slow registration of sparse clinical 3D scans.
method Learning-based registration method tailored for clinical sparse MRI.
result Orders of magnitude faster and more accurate than existing methods.
Clinical AI models fail to transfer between sites due to site-specific practices.
problem Clinical AI models perform poorly at new sites.
method Identify and isolate site-specific clinical practices affecting data distribution.
result A potential solution to improve model transferability.
Model learns hierarchical EHR representation for clinical outcome prediction.
problem Capturing temporal patterns in irregular clinical event sequences.
method Proposes differentiated mechanisms to model events at different time scales, learning hierarchical representations.
result Significantly improves clinical outcome prediction, achieving AUC scores of 0.94 and 0.90 for death and ICU admission respectively.
System suggests clinical concepts in real-time for faster note creation.
problem Efficiently creating structured clinical notes with minimal keystrokes.
method Contextual autocompletion using shallow neural networks.
result Reduces keystrokes by 67% in real hospital environments.
AutoML enhances clinical metabolic profiling by adjusting for confounders.
problem Identifying and adjusting for clinical confounders in AutoML for metabolic profiling.
method Tandem rank-accuracy measure for feature selection, residual training adjustment for confounders.
result Increased homocysteine concentration associated with long-term metformin exposure.
Machine learning aids in clinical prediction tasks.
problem Improving accuracy in clinical predictions.
method Introduction to machine learning concepts and algorithms, followed by practical application to clinical datasets.
result Demonstrated the application of machine learning models to clinical prediction problems.
Novel metrics improve machine learning models for ICU patient care.
problem Predicting vital sign trajectories for early detection of adverse events.
method Developed novel performance metrics aligned with clinical contexts, validated on simulated and real datasets, and optimized neural networks using these metrics.
result Neural networks trained with these metrics excel in predicting clinically significant events.
AI predicts medical specialty diagnostic choices from EHR records.
problem Predicting timely medical specialty diagnostic workups for patients.
method Ensemble of feed-forward neural networks trained on EHR data.
result Significantly higher accuracy compared to traditional checklists.
Study assesses weakly-supervised methods for rare outcomes in medical records.
problem Identifying patients with specific medical conditions using electronic health records.
method Compared three methods (PheNorm, MAP, and sureLDA) in simulations with varying outcomes and silver labels.
result No single method consistently outperformed others, but sureLDA often did well.
Machine learning predicts patient recruitment for clinical trials.
problem Improving patient recruitment prediction for clinical trials.
method Machine learning methods applied to historical clinical trial data.
result Reduced prediction error compared to current industry standards.