This article proposes Multinomial Probit Bayesian Additive Regression Trees (MPBART) as a multinomial probit extension of BART - Bayesian Additive Regression Trees (Chipman et al (2010)). MPBART is flexible to allow inclusion of predictors that describe the observed units as well as the available choice alternatives. T…
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48 results for “Bayesian probit regression”
Efficient expectation propagation for posterior approximation in high-dimensional probit modelsstat.CO
EP method speeds up Bayesian probit regression in high dimensions.
problem Computational challenges in high-dimensional Bayesian probit regression.
method Adapting EP approximation to multivariate Gaussian prior and skew-normal distribution.
result EP routine is computationally feasible in high-dimensional settings.
Probit Monotone BARTstat.ML
Probit Monotone BART estimates binary outcomes using monotonic functions.
problem Estimating conditional mean functions for binary outcomes with monotonicity constraints.
method Proposes a new BART variant that incorporates monotonicity constraints for binary outcomes.
result Allows for more precise estimation of monotonic functions in binary outcome models.
Bayesian methods improve inference for cumulative probit models on large datasets.
problem Challenges in Bayesian inference for large cumulative probit models.
method Proposed scalable algorithms using Variational Bayes and Expectation Propagation.
result Superior computational performance and accuracy compared to MCMC.
Efficient computation of predictive probabilities in probit models via expectation propagationstat.CO
Binary classification models get more efficient predictive probabilities.
problem Computing predictive probabilities in Bayesian probit models is computationally challenging.
method Use of expectation propagation (EP) to find a closed-form expression for predictive probabilities.
result Closed-form predictive probabilities improve over existing methods.
Efficiently identifies important variables in binary outcomes using variational Bayes.
problem Bayesian variable selection for binary outcomes with computational challenges.
method Mean-field variational Bayes approximation with closed-form updates and efficient inference algorithm.
result Successfully identifies important variables and is orders of magnitude faster than MCMC.
Paper develops Bayesian inference for discrete-choice mnp models with Gaussian priors.
problem Estimating parameters of discrete-choice multinomial probit models with Gaussian priors.
method Adapts Fasano and Durante's results to a specific mnp model with zero mean and independent Gaussian priors, simplifying posterior distribution parameters and providing a new variational algorithm.
result Simplified expressions for posterior distribution parameters and a novel variational algorithm.
The study examines mixing times of data-augmentation Gibbs samplers for high-dimensional probit regression.
problem Investigating convergence properties of data-augmentation samplers for Bayesian probit regression.
method Using recent results on Gibbs samplers for log-concave targets, the study provides non-asymptotic bounds on mixing times.
result Explicit non-asymptotic bounds on mixing times depend on design matrix and prior precision, holding uniformly over responses.
We analyze mixing times of three DA algorithms for regression models.
problem Analyzing mixing times of data augmentation algorithms for regression models.
method Modified conductance-based method to study mixing times of Gibbs samplers.
result Prove non-asymptotic polynomial upper bounds on mixing times for DA algorithms.
-Generalized Probit Regression and Scalable Maximum Likelihood Estimation via Sketching and Coresetscs.DS
New method for efficient maximum likelihood estimation of -generalized probit regression.
problem Efficient estimation of -generalized probit regression models.
method Combining sketching techniques with importance subsampling to obtain a coreset.
result Maximum likelihood estimator can be approximated efficiently up to a factor of on large data.
Algorithm improves variational inference in Wasserstein distance.
problem Improving variational inference methods for complex models.
method Wasserstein contraction analysis of coordinate ascent.
result General and sharp convergence guarantees for various models.
Two methods use BART to model missing data in leaf photosynthetic trait data.
problem Handling missing data in multivariate outcomes with non-ignorable mechanisms.
method Bayesian Additive Regression Trees (BART) for joint modeling of data and missingness indicators.
result Both methods effectively recover various missingness mechanisms and outperform existing approaches.
Linearized Binary Regressionstat.ML
Probit regression was first proposed by Bliss in 1934 to study mortality rates of insects. Since then, an extensive body of work has analyzed and used probit or related binary regression methods (such as logistic regression) in numerous applications and fields. This paper provides a fresh angle to such well-established…
A Class of Conjugate Priors for Multinomial Probit Models which Includes the Multivariate Normal Onestat.ME
New conjugate priors improve Bayesian inference for multinomial probit models.
problem Lack of tractable conjugate priors for efficient Bayesian inference in multinomial probit models.
method Unified skew-normal (SUN) distributions as conjugate priors, leading to improved posterior inference and classification.
result Improved computational methods for posterior inference and classification, especially in high dimensions.
Unified Skew-Gaussian process framework for various regression and classification tasks.
problem Handling multiple types of regression and classification problems.
method Generalization of Skew-Gaussian processes to handle various types of data and likelihoods.
result Closed-form posterior distributions for multiple tasks.
Bayesian method models binary response and covariates for two groups, estimating causal relationships.
problem Estimating causal relationships between binary response and covariates in observational data.
method Gaussian DAG-probit model with MCMC sampling for posterior distribution estimation.
result Validated method on simulated and real datasets, showing value of grouping variable in causality.
SoftBart improves BART for high-noise modeling in science.
problem High noise in scientific data.
method Soft BART algorithm for Bayesian additive regression trees.
result Improves predictive performance and facilitates larger model integration.
Proposes efficient Bayesian logistic regression for large sparse datasets.
problem Infeasibility of theoretical Bayesian methods for large sparse feature sets.
method Low complexity analytical approximations for sparse online logistic and probit regressions.
result Empirical results show superior performance compared to more complex methods.
Novel Bayesian model improves EEG-based BCI character selection.
problem Accurately identifying target-related responses in EEG-based BCIs.
method Probit-link Split-and-merge Gaussian Process (P-SMGP) prior for feature selection.
result Reduces computational complexity and provides interpretable statistical interpretations.
Characterizes uncertainty in high-dimensional linear classification models.
problem Assessing uncertainty in high-dimensional linear classification models.
method Approximate message passing algorithm for posterior marginals, closed-form formula for joint statistics.
result Closed-form formula for joint statistics between logistic classifier, Bayesian uncertainty, and ground-truth probit uncertainty.
New algorithms improve MPBART for HIV patient data.
problem Improving inference for multinomial outcomes in HIV patient data.
method Introduced two new algorithms for fitting MPBART.
result Better performance in MCMC convergence and predictive accuracy.
Statistical models with constrained probability distributions are abundant in machine learning. Some examples include regression models with norm constraints (e.g., Lasso), probit, many copula models, and latent Dirichlet allocation (LDA). Bayesian inference involving probability distributions confined to constrained d…
Linear Mixed Models (LMMs) are important tools in statistical genetics. When used for feature selection, they allow to find a sparse set of genetic traits that best predict a continuous phenotype of interest, while simultaneously correcting for various confounding factors such as age, ethnicity and population structure…
Improves graph-based active learning for non-Gaussian models.
problem Efficiently selecting data points for labeling in graph-based semi-supervised learning.
method Approximates non-Gaussian distributions, introduces rank-one update and model change acquisition function.
result Enhanced active learning for graph-based SSL under non-Gaussian models.
Learning sparse generalized linear models with binary outcomes via iterative hard thresholdingmath.ST
New algorithm learns sparse GLMs for binary outcomes efficiently.
problem Sparse modeling of binary outcomes in high-dimensional data.
method Iterative hard thresholding algorithm (BIHT) for sparse GLMs.
result BIHT achieves statistical optimality for logistic regression.
An efficient algorithm selects the correct number of latent dimensions in multidimensional probit models.
problem Determining the correct number of latent dimensions in multidimensional probit graded response models.
method Adaptive Bayesian dimension selection framework using cumulative ordered spike-and-slab (COSS) prior and Albert--Chib latent response augmentation.
result The proposed method accurately recovers latent structures and avoids repeated model fitting.
The main challenges that arise when adopting Gaussian Process priors in probabilistic modeling are how to carry out exact Bayesian inference and how to account for uncertainty on model parameters when making model-based predictions on out-of-sample data. Using probit regression as an illustrative working example, this …
New method simplifies Bayesian analysis for categorical data.
problem Difficulties in scaling GLMs for categorical data due to non-conjugacy or posterior dependencies.
method Defining CB models with binary approximations for tractable inference.
result Fast and scalable inference for thousands of categories, outperforming competitors.
We introduce a Bayesian nonparametric regression model for data with multiway (tensor) structure, motivated by an application to periodontal disease (PD) data. Our outcome is the number of diseased sites measured over four different tooth types for each subject, with subject-specific covariates available as predictors.…
Efficient cross-validation for multi-penalty ridge regression.
problem Optimizing penalties in cross-validation for multi-penalty ridge regression.
method Developed a computationally efficient formula for the multi-penalty, sample-weighted hat-matrix.
result Significant speed-up in cross-validation for ridge regression models.
The logistic regression model is known to converge to a Poisson point process model if the binary response tends to infinitely imbalanced. In this paper, it is shown that this phenomenon is universal in a wide class of link functions on binomial regression. The proof relies on the extreme value theory. For the logit, p…
Classification of high dimensional data finds wide-ranging applications. In many of these applications equipping the resulting classification with a measure of uncertainty may be as important as the classification itself. In this paper we introduce, develop algorithms for, and investigate the properties of, a variety o…
The logistic normal distribution has recently been adapted via the transformation of multivariate Gaus- sian variables to model the topical distribution of documents in the presence of correlations among topics. In this paper, we propose a probit normal alternative approach to modelling correlated topical structures. O…
Deep model tackles zero-inflated multi-species abundance estimation.
problem Predicting species distribution across landscapes with inflated zero counts.
method Proposes a novel deep learning model combining multivariate probit and log-normal distributions.
result Model outperforms existing methods on bird and fish population datasets.
This paper provides a theoretical and computational justification of the long held claim that of the similarity of the probit and logit link functions often used in binary classification. Despite this widespread recognition of the strong similarities between these two link functions, very few (if any) researchers have …
In cargo logistics, a key performance measure is transport risk, defined as the deviation of the actual arrival time from the planned arrival time. Neither earliness nor tardiness is desirable for customer and freight forwarders. In this paper, we investigate ways to assess and forecast transport risks using a half-yea…
Skew Gaussian Processes improve classification performance by allowing asymmetry.
problem Limited use of Gaussian processes in applications requiring asymmetry.
method Propose Skew-Gaussian processes (SkewGPs) as a non-parametric prior over functions, extending the multivariate Unified Skew-Normal distribution to stochastic processes.
result SkewGPs provide better performance than symmetric Gaussian processes in classification tasks.
Efficient EP algorithm improves smoothing distribution inference in financial models.
problem Computational intractability of smoothing distribution in high dimensions.
method Adapted expectation propagation (EP) algorithms for the unified skew-normal family.
result Accuracy gains in financial illustrations over existing approximate algorithms.
MPVAE learns latent embeddings and label correlations for multi-label classification.
problem Challenging task of predicting multiple targets with label correlations.
method Proposes MPVAE, a novel framework that learns latent embedding spaces and label correlations using a Multivariate Probit model.
result MPVAE outperforms state-of-the-art methods on various application domains and is robust under noisy settings.
The multivariate probit model (MVP) is a popular classic model for studying binary responses of multiple entities. Nevertheless, the computational challenge of learning the MVP model, given that its likelihood involves integrating over a multidimensional constrained space of latent variables, significantly limits its a…
Learning multiple tasks across heterogeneous domains is a challenging problem since the feature space may not be the same for different tasks. We assume the data in multiple tasks are generated from a latent common domain via sparse domain transforms and propose a latent probit model (LPM) to jointly learn the domain t…
Proposes a new tensor factorization model for better link prediction in knowledge graphs.
problem Lack of information in treating missing and non-existing relations equally in tensor factorization models.
method Introduces a binary tensor factorization model with probit link to address the issue.
result Shows improved prediction accuracy and interpretability compared to existing models.
Black-box alpha (BB-) is a new approximate inference method based on the minimization of -divergences. BB- scales to large datasets because it can be implemented using stochastic gradient descent. BB- can be applied to complex probabilistic models with little effort since it only requires as input the likel…
Designs efficient algorithms for online and sliding window models of subspace embeddings for all p.
problem Design efficient algorithms for online and sliding window models of subspace embeddings for all p.
method Develops nearly optimal subspace embeddings for all in the online coreset and sliding window models.
result First nearly optimal subspace embeddings for all in the online coreset and sliding window models.
Scalings in which the graph Laplacian approaches a differential operator in the large graph limit are used to develop understanding of a number of algorithms for semi-supervised learning; in particular the extension, to this graph setting, of the probit algorithm, level set and kriging methods, are studied. Both optimi…
New algorithm minimizes inclusive KL for VI, improving accuracy.
problem Improving variational inference accuracy with KL(p||q).
method Markovian score climbing (MSC) using stochastic gradients.
result MSC converges to local optimum of inclusive KL without bias.
We introduce a novel kernel that models input-dependent couplings across multiple latent processes. The pairwise joint kernel measures covariance along inputs and across different latent signals in a mutually-dependent fashion. A latent correlation Gaussian process (LCGP) model combines these non-stationary latent comp…
We consider probabilistic multinomial probit classification using Gaussian process (GP) priors. The challenges with the multiclass GP classification are the integration over the non-Gaussian posterior distribution, and the increase of the number of unknown latent variables as the number of target classes grows. Expecta…