New method learns DAGs from data without acyclicity constraint.
problem Learning DAGs from data without imposing acyclicity.
method Sparse matrix factorization and ℓ1-penalized optimization. result Empirical success in recovering true graphs and almost-DAG graphs.
COSMO learns DAG structure without acyclicity constraints.
problem Learning DAG structure from data efficiently and without constraints.
method Differentiable approximation of smooth orientation matrix.
result COSMO converges to acyclic solutions without evaluating acyclicity.
ENCOD learns causal graphs efficiently without acyclicity constraints.
problem Learning causal graphical models from observational and interventional data.
method ENCOD uses optimization of edge likelihoods with separate orientation parameters.
result ENCOD efficiently recovers large graphs (hundreds of nodes) without acyclicity constraints.
Proposes an approach to ensure acyclic graphs in Bayesian structure learning.
problem Ensuring acyclic graphs in Bayesian structure learning.
method Integration of knowledge from topological orderings to constrain acyclicty.
result Outperforms related Bayesian score-based approaches in experiments.
DAGgr aggregates multiple DAGs to stabilize causal structure learning.
problem Stability in learning causal structure from data.
method Model averaging of candidate DAGs weighted by predictive likelihood, with acyclicity enforced.
result DAGgr consistently outperforms individual DAGs and bootstrap-aggregation baselines.
The paper tackles learning varying DAG structures based on contextual features.
problem Learning a single DAG for the entire population from observational data.
method A neural network that maps contextual features to a weighted adjacency matrix of a DAG, with a projection layer to ensure acyclicity.
result The new approach can recover context-specific DAGs where existing methods fail.
We explore non-acyclic GFlowNets in discrete settings.
problem Training and understanding non-acyclic GFlowNets in discrete environments.
method Relaxing acyclicity assumption, simpler theoretical framework, novel theoretical insights, experimental validation.
result Theoretical and experimental validation of non-acyclic GFlowNets in discrete environments.
ProDAG uses variational inference to learn DAGs with uncertainty quantification.
problem Statistical and computational challenges in learning a single DAG from data.
method Bayesian variational inference framework with novel distributions.
result ProDAG outperforms state-of-the-art alternatives in accuracy and uncertainty quantification.
Develops a new method for learning non-parametric DAGs using RKHS.
problem Challenges of learning non-parametric causal models with large combinatorial search space.
method Uses reproducing kernel Hilbert spaces (RKHS) and sparsity-inducing regularization terms based on partial derivatives to enforce acyclicity.
result Shows improved performance through simulations and data analyses.
We present a method to generate directed acyclic graphs (DAGs) using deep reinforcement learning, specifically deep Q-learning. Generating graphs with specified structures is an important and challenging task in various application fields, however most current graph generation methods produce graphs with undirected edg…
This supplementary material includes three parts: some preliminary results, four examples, an experiment, three new algorithms, and all proofs of the results in the paper "Reversible MCMC on Markov equivalence classes of sparse directed acyclic graphs".
The paper shows that relaxing assumptions about causal graphs can lead to exponentially large equivalence classes.
problem The size of Markov equivalence classes under relaxed assumptions.
method Analytical proofs for three settings: sparse random directed acyclic graphs, uniformly random acyclic directed mixed graphs, and uniformly random directed cyclic graphs.
result Exponentially large lower bounds for the expected size of Markov equivalence classes.
Neural networks with DAGs show linearity as width increases.
problem Understanding linearity in neural networks with arbitrary DAG structures.
method Analyzing the transition to linearity in networks with arbitrary DAGs, characterizing width by minimum in-degree.
result General neural networks with DAGs exhibit linearity as width approaches infinity.
ALIAS uses RL to learn DAGs without acyclicity constraints.
problem Efficiently learning DAGs from observational data without acyclicity constraints.
method ALIAS employs RL to generate DAGs in a single step with optimal complexity, bypassing acyclicity constraints.
result ALIAS outperforms state-of-the-art methods in causal discovery.
Directed acyclic graphs are the basic representation of the structure underlying Bayesian networks, which represent multivariate probability distributions. In many practical applications, such as the reverse engineering of gene regulatory networks, not only the estimation of model parameters but the reconstruction of t…
Paper constructs unfaithful probability distributions in binary causal graphs.
problem Unfaithful probability distributions in binary causal graphs.
method Constructs unfaithful probability distributions in binary causal graphs.
result Examples of unfaithful probability distributions in binary causal graphs.
Paper proposes DAG-DB for learning discrete DAGs via backpropagation.
problem Learning Directed Acyclic Graphs (DAGs) from data.
method DAG-DB uses Discrete Backpropagation with I-MLE and Straight-Through Estimation.
result DAG-DB learns DAGs effectively using probabilistic sampling and backpropagation.
PIVID infers DAG structures from data using variational inference and permutations.
problem Estimating the structure of Bayesian networks from observational data.
method PIVID uses variational inference and continuous relaxations of discrete distributions to infer a distribution over permutations and DAGs.
result PIVID outperforms deterministic and Bayesian approaches in estimating DAG structures from data.
Paper proposes methods to learn DAGs from partial orderings.
problem Learning DAGs from partial orderings is challenging.
method General estimation framework and efficient algorithms for low- and high-dimensional problems.
result Efficient estimation of DAGs from partial orderings is possible.
Unified framework for clustering and learning causal graphs across subjects.
problem Bias and obscured subpopulation-specific dependencies in multivariate systems.
method Directed Acyclic Graph-based Dependency Clustering via Alternating Direction Method of Multipliers (DAG-DC-ADMM) integrated with Structural Equation Modeling (SEM).
result Unified framework recovers cluster-specific causal dependency structures with high true positive rate and low false discovery rate.
DAGSurv uses deep neural networks to analyze survival data based on causal graphs.
problem Analyzing survival data with causal relationships between variables.
method Variational inference-based conditional variational autoencoder for causal structured survival prediction.
result DAGSurv outperforms other survival analysis methods in predicting time-to-event.
Efficient algorithms decide algebraic constraints of causal graphs.
problem Distinguish causal graphs with latent confounders.
method Study algebraic constraints and propose efficient algorithms.
result Decide equivalence or subset of algebraic constraints.
In this note we derive enumerative formulas for several types of labelled acyclic directed graphs by slight modifications of the familiar recursive formula for simple acyclic digraphs. These considerations are motivated by, and based upon, recent combinatorial results in geometric topology obtained by S.Choi, who estab…
Study of Betti numbers in prodsimplicial complexes for directed graphs, focusing on DNA recombination.
problem Analyzing Betti numbers in directed graphs for DNA recombination.
method Custom prodsimplicial complexes for acyclic directed graphs, investigating Betti numbers.
result Investigated Betti numbers and cycles in prodsimplicial complexes for DNA recombination.
Identifies causal effects in partially directed acyclic graphs with observed variables.
problem Identifying conditional causal effects in graphs with background knowledge and observed variables.
method Three results: identification formula, do calculus generalization, and algorithm completeness.
result Complete algorithm for identifying conditional effects in MPDAGs.
This dissertation uses ILP to learn Bayesian network structures efficiently.
problem Learning the structure of Bayesian networks from data.
method Integer Linear Programming formulation with cluster constraints and cutting planes.
result The approach finds feasible solutions for Bayesian network structures efficiently.
The paper proposes using low rank assumption to improve causal structure learning in DAGs.
problem Challenges in learning causal structures in high-dimensional, non-sparse DAGs.
method Exploits low rank assumption of DAG adjacency matrix to adapt causal structure learning methods.
result Maximum rank is highly related to hubs, suggesting low rank for scale-free networks.
Efficiently learns DAG structures without cycles.
problem Learning DAG structures efficiently with constraints.
method Proposes DAG-NoCurl, a two-step algorithm to find and project acyclic graphs.
result Significantly improves efficiency over existing methods, often by more than one order of magnitude.
NOTMAD estimates context-specific Bayesian networks without breaking datasets.
problem Non-convexity of acyclic graphs limits sharing information between context-specific estimators.
method NOTMAD models context-specific Bayesian networks as mixtures of archetypal DAGs, estimating structures and parameters jointly.
result NOTMAD shares information between context-specific acyclic graphs, enabling single-sample resolution.
Study counterfactuals in cyclic systems with shifts and scales.
problem Counterfactual inference in cyclic systems with shifts and scales.
method Shift-scale interventions in cyclic SCMs.
result Valid inference in cyclic systems with shifts and scales.
This paper considers the problem of estimating the structure of multiple related directed acyclic graph (DAG) models. Building on recent developments in exact estimation of DAGs using integer linear programming (ILP), we present an ILP approach for joint estimation over multiple DAGs, that does not require that the ver…
Directed acyclic graphs (DAGs) are a popular framework to express multivariate probability distributions. Acyclic directed mixed graphs (ADMGs) are generalizations of DAGs that can succinctly capture much richer sets of conditional independencies, and are especially useful in modeling the effects of latent variables im…
We introduce a novel class of labeled directed acyclic graph (LDAG) models for finite sets of discrete variables. LDAGs generalize earlier proposals for allowing local structures in the conditional probability distribution of a node, such that unrestricted label sets determine which edges can be deleted from the underl…
CaTs use DAGs with transformers to enforce causal constraints, improving neural network robustness.
problem Neural networks lack inherent causal structure respect, leading to reliability issues.
method Introducing Causal Transformers (CaTs) that operate under predefined causal constraints specified by DAGs.
result CaTs improve robustness and interpretability of neural networks under causal constraints.
We consider the problem of learning causal directed acyclic graphs from an observational joint distribution. One can use these graphs to predict the outcome of interventional experiments, from which data are often not available. We show that if the observational distribution follows a structural equation model with an …
Benchmark data sets are an indispensable ingredient of the evaluation of graph-based machine learning methods. We release a new data set, compiled from International Planning Competitions (IPC), for benchmarking graph classification, regression, and related tasks. Apart from the graph construction (based on AI planning…
Causal inference relies on the structure of a graph, often a directed acyclic graph (DAG). Different graphs may result in different causal inference statements and different intervention distributions. To quantify such differences, we propose a (pre-) distance between DAGs, the structural intervention distance (SID). T…
The sizes of Markov equivalence classes of directed acyclic graphs play important roles in measuring the uncertainty and complexity in causal learning. A Markov equivalence class can be represented by an essential graph and its undirected subgraphs determine the size of the class. In this paper, we develop a method to …
Graph structured data are abundant in the real world. Among different graph types, directed acyclic graphs (DAGs) are of particular interest to machine learning researchers, as many machine learning models are realized as computations on DAGs, including neural networks and Bayesian networks. In this paper, we study dee…
New method learns graph structure with hidden causes from observational data.
problem Learning the structure of linear non-Gaussian models with hidden causes.
method Augments hidden variable structure by learning multidirected edges and uses higher order cumulants.
result Correct structure recovery for bow-free acyclic mixed graphs with multi-directed edges.
New distances for causal graphs improve evaluation of learned structures.
problem Difficulty in evaluating graphs learned by causal discovery algorithms.
method Developed a framework for causal distances, including new reachability algorithms.
result Improved distances are faster and more scalable than existing methods.
A new method learns DAGs from Gaussian data without verifying acyclicity.
problem Learning DAGs from Gaussian data without verifying acyclicity.
method Relaxation technique for permutation matrix estimation and cyclic coordinatewise descent for sparse Cholesky factor estimation.
result The method recovers DAGs without verifying acyclicity constraints.
A new GNM model outperforms MLP for tabular data.
problem Learning with tabular data.
method Proposes Graph Neural Machine (GNM) replacing MLP's graph representation with a nearly complete graph and using synchronous message passing.
result GNM outperforms MLP in classification and regression tasks.
Estimating the structure of directed acyclic graphs (DAGs, also known as Bayesian networks) is a challenging problem since the search space of DAGs is combinatorial and scales superexponentially with the number of nodes. Existing approaches rely on various local heuristics for enforcing the acyclicity constraint. In th…
Generalizes Hodge correlators using quantum master equation concepts.
problem Developing a mathematical framework for non-acyclic Chern-Simons theory.
method Introduces a DG Lie algebra of uni-trivalent graphs with loops satisfying a Maurer-Cartan equation.
result Arithmetic analogue of effective action and quantum master equation.
This work presents entropic constraints from DAGs with hidden variables.
problem Characterizing causal relations in systems with hidden variables.
method Entropic inequality constraints derived from e-separation relations. result These constraints can learn about true causal models from observed data.
Causal graphs, such as directed acyclic graphs (DAGs) and partial ancestral graphs (PAGs), represent causal relationships among variables in a model. Methods exist for learning DAGs and PAGs from data and for converting DAGs to PAGs. However, these methods are significantly limited in that they only output a single cau…
Discovering causal structure among a set of variables is a fundamental problem in many empirical sciences. Traditional score-based casual discovery methods rely on various local heuristics to search for a Directed Acyclic Graph (DAG) according to a predefined score function. While these methods, e.g., greedy equivalenc…